Jatropha Genome Database

JcCB0082871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082871.10 - phase: 2 /partial
         (301 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49180.1 | Symbols: RID3 | RID3 (ROOT INITIATION DEFECTIVE 3)...    93   2e-19

>AT3G49180.1 | Symbols: RID3 | RID3 (ROOT INITIATION DEFECTIVE 3);
           nucleotide binding | chr3:18229810-18231874 FORWARD
          Length = 438

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 115/285 (40%), Gaps = 38/285 (13%)

Query: 3   AYSCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXX 62
           A +   +G YL GG  SG+ Y+WEVA G LLK W  H++S+ C++F              
Sbjct: 83  ALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDG 142

Query: 63  MICVWSMLSLLD-----MGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATCKA 117
            I VWS++ L D      GN                                  D TCK 
Sbjct: 143 SIRVWSLIRLFDDFQRQQGN-TLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCKV 201

Query: 118 WDLVSGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQL 177
           W L  G L++   +P  I  +AL P     +AG+ D +I++  +N        V+     
Sbjct: 202 WSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGAINATSEYGTQVLGS--- 258

Query: 178 VVLEGHKGSITALTFSTLG--LISASEDCTISLWDAVSWVPIQ--------KFNP----- 222
            V E  K +IT L +   G  LIS SED  + +WD  S   ++        +  P     
Sbjct: 259 -VSEKGK-AITCLAYCADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGSRKGPVNNIQ 316

Query: 223 --------SSNHQRVSYKFRVSL----LHKCPLPAANSSKGTVTL 255
                   +SN  +VS+K R +L    L K   P  ++  G VT+
Sbjct: 317 IVRKTIVANSNKTQVSWKSRGALIPPPLEKYERPVEDTMDGIVTV 361