Jatropha Genome Database

JcCB0080851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.20 - phase: 1 /partial
         (116 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39540.2 | Symbols:  | shikimate kinase family protein | chr4...   118   8e-28
AT4G39540.1 | Symbols:  | shikimate kinase family protein | chr4...   118   8e-28
AT2G21940.5 | Symbols:  | shikimate kinase, putative | chr2:9351...   117   1e-27
AT2G21940.2 | Symbols:  | shikimate kinase, putative | chr2:9351...   117   1e-27
AT2G21940.1 | Symbols:  | shikimate kinase, putative | chr2:9351...   117   1e-27
AT2G21940.4 | Symbols:  | shikimate kinase, putative | chr2:9351...   117   1e-27
AT2G21940.3 | Symbols:  | shikimate kinase, putative | chr2:9351...   117   1e-27
AT3G26900.3 | Symbols:  | shikimate kinase family protein | chr3...    57   2e-09
AT3G26900.2 | Symbols:  | shikimate kinase family protein | chr3...    57   2e-09
AT3G26900.1 | Symbols:  | shikimate kinase family protein | chr3...    57   2e-09

>AT4G39540.2 | Symbols:  | shikimate kinase family protein |
           chr4:18378561-18380253 FORWARD
          Length = 300

 Score =  118 bits (295), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 74/94 (78%), Gaps = 2/94 (2%)

Query: 1   SVLESGSLPVS--SDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYS 58
           ++LE+GSL  S   +E  ILK K++EV PY+NGR +YLVGMMGSGKTTVGK++++ L Y+
Sbjct: 66  ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 125

Query: 59  FCDCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
           F DCDTLIE+ ++G SVAEIF+ +GE  FR KE 
Sbjct: 126 FFDCDTLIEQAMKGTSVAEIFEHFGESVFREKET 159


>AT4G39540.1 | Symbols:  | shikimate kinase family protein |
           chr4:18378561-18380253 FORWARD
          Length = 300

 Score =  118 bits (295), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 74/94 (78%), Gaps = 2/94 (2%)

Query: 1   SVLESGSLPVS--SDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYS 58
           ++LE+GSL  S   +E  ILK K++EV PY+NGR +YLVGMMGSGKTTVGK++++ L Y+
Sbjct: 66  ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 125

Query: 59  FCDCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
           F DCDTLIE+ ++G SVAEIF+ +GE  FR KE 
Sbjct: 126 FFDCDTLIEQAMKGTSVAEIFEHFGESVFREKET 159


>AT2G21940.5 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%), Gaps = 4/93 (4%)

Query: 1   SVLESGSL-PVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSF 59
           ++LE+GS+ P   D   ILK K++EV PY+NGR +YLVGMMGSGKTTVGK++S+VL Y+F
Sbjct: 74  ALLETGSVYPFDED---ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTF 130

Query: 60  CDCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
            DCDTLIE+ + G SVAEIF  +GE +FR KE 
Sbjct: 131 FDCDTLIEQAMNGTSVAEIFVHHGENFFRGKET 163


>AT2G21940.2 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%), Gaps = 4/93 (4%)

Query: 1   SVLESGSL-PVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSF 59
           ++LE+GS+ P   D   ILK K++EV PY+NGR +YLVGMMGSGKTTVGK++S+VL Y+F
Sbjct: 74  ALLETGSVYPFDED---ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTF 130

Query: 60  CDCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
            DCDTLIE+ + G SVAEIF  +GE +FR KE 
Sbjct: 131 FDCDTLIEQAMNGTSVAEIFVHHGENFFRGKET 163


>AT2G21940.1 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 303

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%), Gaps = 4/93 (4%)

Query: 1   SVLESGSL-PVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSF 59
           ++LE+GS+ P   D   ILK K++EV PY+NGR +YLVGMMGSGKTTVGK++S+VL Y+F
Sbjct: 74  ALLETGSVYPFDED---ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTF 130

Query: 60  CDCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
            DCDTLIE+ + G SVAEIF  +GE +FR KE 
Sbjct: 131 FDCDTLIEQAMNGTSVAEIFVHHGENFFRGKET 163


>AT2G21940.4 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352881 FORWARD
          Length = 304

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%), Gaps = 4/93 (4%)

Query: 1   SVLESGSL-PVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSF 59
           ++LE+GS+ P   D   ILK K++EV PY+NGR +YLVGMMGSGKTTVGK++S+VL Y+F
Sbjct: 75  ALLETGSVYPFDED---ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTF 131

Query: 60  CDCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
            DCDTLIE+ + G SVAEIF  +GE +FR KE 
Sbjct: 132 FDCDTLIEQAMNGTSVAEIFVHHGENFFRGKET 164


>AT2G21940.3 | Symbols:  | shikimate kinase, putative |
           chr2:9351106-9352622 FORWARD
          Length = 276

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%), Gaps = 4/93 (4%)

Query: 1   SVLESGSL-PVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSF 59
           ++LE+GS+ P   D   ILK K++EV PY+NGR +YLVGMMGSGKTTVGK++S+VL Y+F
Sbjct: 74  ALLETGSVYPFDED---ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTF 130

Query: 60  CDCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
            DCDTLIE+ + G SVAEIF  +GE +FR KE 
Sbjct: 131 FDCDTLIEQAMNGTSVAEIFVHHGENFFRGKET 163


>AT3G26900.3 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%)

Query: 10  VSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCDCDTLIEEE 69
           V SD   ++K K+ ++ P + G  I+LVG+  S KT  GK+L++ L Y + D D LI E 
Sbjct: 68  VDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEA 127

Query: 70  VQGISVAEIFKLYGEGYFRNKEV 92
             G   A+  K   E  F+  E 
Sbjct: 128 AGGNVSAQALKEADEKAFQESET 150


>AT3G26900.2 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%)

Query: 10  VSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCDCDTLIEEE 69
           V SD   ++K K+ ++ P + G  I+LVG+  S KT  GK+L++ L Y + D D LI E 
Sbjct: 68  VDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEA 127

Query: 70  VQGISVAEIFKLYGEGYFRNKEV 92
             G   A+  K   E  F+  E 
Sbjct: 128 AGGNVSAQALKEADEKAFQESET 150


>AT3G26900.1 | Symbols:  | shikimate kinase family protein |
           chr3:9912314-9914424 REVERSE
          Length = 280

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%)

Query: 10  VSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCDCDTLIEEE 69
           V SD   ++K K+ ++ P + G  I+LVG+  S KT  GK+L++ L Y + D D LI E 
Sbjct: 68  VDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEA 127

Query: 70  VQGISVAEIFKLYGEGYFRNKEV 92
             G   A+  K   E  F+  E 
Sbjct: 128 AGGNVSAQALKEADEKAFQESET 150