Jatropha Genome Database

JcCB0080851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.10 + phase: 0 /partial
         (156 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33780.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    88   2e-18
AT1G69935.1 | Symbols: SHW1 | SHW1 (SHORT HYPOCOTYL IN WHITE LIG...    58   2e-09

>AT4G33780.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
           thaliana protein match is: SHW1 (SHORT HYPOCOTYL IN
           WHITE LIGHT1) (TAIR:AT1G69935.1); Has 20 Blast hits to
           20 proteins in 5 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:16202174-16203617 REVERSE
          Length = 203

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 52/53 (98%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           +RF++N+F+K+SK+AR+AVRS+LPVSISTKLV FSVNGVL+LAFLW+LKAFLE
Sbjct: 100 LRFVENVFRKISKRARKAVRSILPVSISTKLVGFSVNGVLILAFLWILKAFLE 152


>AT1G69935.1 | Symbols: SHW1 | SHW1 (SHORT HYPOCOTYL IN WHITE
           LIGHT1) | chr1:26342072-26343082 REVERSE
          Length = 192

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 44/53 (83%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           +RF++++FKKVSK+ ++A R +LP ++S +LV+F+V+G+L+L  L + +AFLE
Sbjct: 101 IRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSITRAFLE 153