Jatropha Genome Database

JcCB0080711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080711.10 + phase: 0 
         (111 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25905.1 | Symbols: CLE27 | CLE27 (CLAVATA3/ESR-RELATED 27); ...    47   2e-06

>AT3G25905.1 | Symbols: CLE27 | CLE27 (CLAVATA3/ESR-RELATED 27);
           protein binding / receptor binding |
           chr3:9486348-9486623 REVERSE
          Length = 91

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 17/76 (22%)

Query: 36  KAGAIRIFPDDNGIMSTSKERNITSNSYKASKDDLFHKFKFFNGRQPXXXXXXXRTEKGF 95
           + GAIRIFP+             T  S K  ++DL  K+ F  G+ P          KG 
Sbjct: 33  RVGAIRIFPE-------------TPASGKRQEEDLMKKY-FGAGKFPPVDSF---VGKGI 75

Query: 96  EENKRRVPSCPDPLHN 111
            E+KR VPSCPDPLHN
Sbjct: 76  SESKRIVPSCPDPLHN 91