Jatropha Genome Database

JcCB0079761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0079761.10 + phase: 2 /pseudo/partial
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16690.1 | Symbols: ORC3, ATORC3 | ORC3 (ORIGIN RECOGNITION C...   144   3e-35

>AT5G16690.1 | Symbols: ORC3, ATORC3 | ORC3 (ORIGIN RECOGNITION
           COMPLEX SUBUNIT 3); protein binding |
           chr5:5474410-5479878 FORWARD
          Length = 734

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 98/128 (76%), Gaps = 1/128 (0%)

Query: 1   DYMQPIESIAFHEIVCFKHVEQLQVALIGDPRKRIQVDLLEFHNIIRCSCCSRSGNSLLP 60
           +YM+P+ES+ FHEI+CFK+V++LQ AL+GDPR RIQ+DLLE H+I+ C CCS+ G +LLP
Sbjct: 573 EYMKPVESVPFHEILCFKNVDKLQSALLGDPRGRIQLDLLESHDILHCVCCSQRGTTLLP 632

Query: 61  SMNDSSIMYSLAREQDDLINLHDWYQSFKLVILSSSNKGKHRTKHFPSPKKRK-VATEAA 119
           SM+D+SI+Y LA+E  D+INLHDWYQSFK +++  S+K K ++K     KKRK +  E  
Sbjct: 633 SMHDTSILYKLAQEHADVINLHDWYQSFKTILIPRSSKAKQKSKSSSKSKKRKEICEEPE 692

Query: 120 KPTEESIQ 127
            P E  IQ
Sbjct: 693 APAEALIQ 700