Jatropha Genome Database

JcCB0078661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078661.20 - phase: 0 
         (175 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21490.1 | Symbols: LEA | LEA (DEHYDRIN LEA) | chr2:9206209-9...    64   5e-11
AT4G39130.1 | Symbols:  | dehydrin family protein | chr4:1822818...    62   2e-10

>AT2G21490.1 | Symbols: LEA | LEA (DEHYDRIN LEA) |
          chr2:9206209-9207040 REVERSE
          Length = 185

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 1  MADLRDEYGNPIQLTDEHGNP-VELTDEHGNPVHITGLATSKP 42
          MADLRDE GNPI LTD  GNP V+LTDEHGNP+++TG+ +S P
Sbjct: 1  MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTP 43


>AT4G39130.1 | Symbols:  | dehydrin family protein |
          chr4:18228183-18228844 REVERSE
          Length = 151

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 1  MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGLATSKP 42
          MADL+DE GNPI LTD HG P +L DE GN +H+TG+AT+ P
Sbjct: 1  MADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHLTGVATTVP 42