Jatropha Genome Database

JcCB0078191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078191.10 + phase: 1 /partial/short
         (34 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67020.1 | Symbols:  | unknown protein | chr5:26749962-267511...    57   3e-09
AT3G50340.1 | Symbols:  | unknown protein | chr3:18665333-186665...    51   1e-07

>AT5G67020.1 | Symbols:  | unknown protein | chr5:26749962-26751146
           FORWARD
          Length = 394

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 30/31 (96%)

Query: 2   RFSDSLRKAGWSSEEVSDALGFDFRPEKEKE 32
           R S+SLRK+GWSSEEVSDALGFDFRPEKE++
Sbjct: 341 RISESLRKSGWSSEEVSDALGFDFRPEKERK 371


>AT3G50340.1 | Symbols:  | unknown protein | chr3:18665333-18666544
           REVERSE
          Length = 403

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 2   RFSDSLRKAGWSSEEVSDALGFDFR 26
           RFS+SLRKAGWSSEEVSDALGFDFR
Sbjct: 350 RFSESLRKAGWSSEEVSDALGFDFR 374