Jatropha Genome Database

JcCB0078111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078111.10 - phase: 0 /partial
         (316 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08370.1 | Symbols: DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5'...   283   7e-77

>AT1G08370.1 | Symbols: DCP1, ATDCP1 | DCP1 (decapping 1);
           m7G(5')pppN diphosphatase/ protein homodimerization |
           chr1:2638355-2640367 FORWARD
          Length = 367

 Score =  283 bits (725), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 142/215 (66%), Positives = 165/215 (76%), Gaps = 5/215 (2%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQ GK++PNLDQ ST++LNLTVLQRIDP+IEEILITAAHVTFYEFNIE +QWSRKDVEG
Sbjct: 1   MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKR+TQPRFQFIVMNRRNT+NLVENLLGDFEYEVQ PYLLYRNA+QEVNGIWFYN 
Sbjct: 61  SLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNK 120

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLXXXXXXXXXXX 180
           RECEEVA LF+RIL+AY              EFEELEA P+M+V++GPL           
Sbjct: 121 RECEEVATLFNRILSAYSKVNQKPKASSSKSEFEELEAKPTMAVMDGPL---EPSSTARD 177

Query: 181 XXXXXXXXXXXNATMVIGSSAANLANSRQPYHSTA 215
                      ++TM +G++A+  A+   PY S+A
Sbjct: 178 APDDPAFVNFFSSTMNLGNTASGSASG--PYQSSA 210