Jatropha Genome Database

JcCB0076221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0076221.10 + phase: 0 /partial
         (108 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65480.1 | Symbols: FT | FT (FLOWERING LOCUS T); phosphatidyl...   196   3e-51
AT4G20370.1 | Symbols: TSF | TSF (TWIN SISTER OF FT); phosphatid...   186   2e-48
AT2G27550.1 | Symbols: ATC | ATC (ARABIDOPSIS THALIANA CENTRORAD...   144   1e-35
AT5G03840.1 | Symbols: TFL1, TFL-1 | TFL1 (TERMINAL FLOWER 1); p...   142   3e-35
AT5G62040.1 | Symbols:  | brother of FT and TFL1 protein (BFT) |...   137   2e-33
AT1G18100.1 | Symbols: E12A11 | E12A11; phosphatidylethanolamine...   119   3e-28

>AT1G65480.1 | Symbols: FT | FT (FLOWERING LOCUS T);
           phosphatidylethanolamine binding / protein binding |
           chr1:24331510-24333689 FORWARD
          Length = 175

 Score =  196 bits (498), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 90/107 (84%), Positives = 98/107 (91%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VMVDPD PSPS+P+LREYLHWLVTDIPATTG TFG EIVCYE+P P+ GIHR VFILFRQ
Sbjct: 68  VMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQ 127

Query: 61  LGRQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRR 107
           LGRQTVY PGWRQNFNTR+FAE+YNLG PVAAV++NCQRESG GGRR
Sbjct: 128 LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRESGCGGRR 174


>AT4G20370.1 | Symbols: TSF | TSF (TWIN SISTER OF FT);
           phosphatidylethanolamine binding |
           chr4:11001011-11002965 REVERSE
          Length = 175

 Score =  186 bits (473), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 93/107 (86%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VMVDPD PSPS+P+ REYLHWLVTDIPATTG  FG E+VCYESPRP  GIHR V +LFRQ
Sbjct: 68  VMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLVLFRQ 127

Query: 61  LGRQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRR 107
           LGRQTVY PGWRQ FNTR+FAE+YNLG PVAA YFNCQRE+G GGRR
Sbjct: 128 LGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRENGCGGRR 174


>AT2G27550.1 | Symbols: ATC | ATC (ARABIDOPSIS THALIANA
           CENTRORADIALIS); phosphatidylethanolamine binding |
           chr2:11773417-11774509 FORWARD
          Length = 175

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 84/109 (77%), Gaps = 3/109 (2%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VM DPD P PSDP LRE+LHW+VTDIP TT V+FG+EI+ YE PRP++GIHRFV++LF+Q
Sbjct: 69  VMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQ 128

Query: 61  LGRQTVYP-PGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
             R +V   P +R  FNTR+FA   +LG PVAAV+FNCQRE  T  RRR
Sbjct: 129 TRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRE--TAARRR 175


>AT5G03840.1 | Symbols: TFL1, TFL-1 | TFL1 (TERMINAL FLOWER 1);
           phosphatidylethanolamine binding | chr5:1024760-1025796
           REVERSE
          Length = 177

 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 85/110 (77%), Gaps = 5/110 (4%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VM+DPD P PSDP L+E+LHW+VT+IP TT  TFG+E+V YE PRPS+GIHRFVF+LFRQ
Sbjct: 71  VMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQ 130

Query: 61  LGRQTVYP--PGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
             R+ ++P  P  R +FNTR FA  Y+LG PVAAV+FN QRE  T  R+R
Sbjct: 131 KQRRVIFPNIPS-RDHFNTRKFAVEYDLGLPVAAVFFNAQRE--TAARKR 177


>AT5G62040.1 | Symbols:  | brother of FT and TFL1 protein (BFT) |
           chr5:24922810-24923709 FORWARD
          Length = 177

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 81/109 (74%), Gaps = 3/109 (2%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           +M+DPDAPSPS+P +REYLHW+VTDIP TT  +FG+EIV YE+P+P  GIHR+VF LF+Q
Sbjct: 68  IMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALFKQ 127

Query: 61  LGRQTVY-PPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
            GRQ V   P  R+ FNT  F+  + L  PVAAVYFN QRE  T  RRR
Sbjct: 128 RGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRE--TAPRRR 174


>AT1G18100.1 | Symbols: E12A11 | E12A11; phosphatidylethanolamine
           binding | chr1:6228049-6230110 REVERSE
          Length = 173

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 78/111 (70%), Gaps = 6/111 (5%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VM DPDAPSPS+PN+RE++HW+V DIP  T  + G+EI+ Y  PRP +GIHR++ +LFRQ
Sbjct: 66  VMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYILVLFRQ 125

Query: 61  ---LGRQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
              +G     PP  R NF+TR FA  ++LG PVA VYFN Q+E  +  RRR
Sbjct: 126 NSPVGLMVQQPPS-RANFSTRMFAGHFDLGLPVATVYFNAQKEPAS--RRR 173