Jatropha Genome Database

JcCB0076151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0076151.10 + phase: 0 /pseudo
         (220 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29170.1 | Symbols: ATMND1 | ATMND1 | chr4:14382985-14385128 ...   152   1e-37
AT4G29170.2 | Symbols: ATMND1 | ATMND1 | chr4:14383594-14385128 ...   129   2e-30

>AT4G29170.1 | Symbols: ATMND1 | ATMND1 | chr4:14382985-14385128
           FORWARD
          Length = 230

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 94/170 (55%)

Query: 3   SKKRGLSLDEKREKILQIFYESQDFFXXXXXXXXXXXXXVIXXXXXXXXXXXXXXXXXXX 62
           SKKRGLSL+EKREK+LQIFYESQDFF             VI                   
Sbjct: 2   SKKRGLSLEEKREKMLQIFYESQDFFLLKELEKMGPKKGVISQSVKDVIQSLVDDDLVAK 61

Query: 63  XKIGTSVYFWSLPSCAGNQLRNVYRRLESDVQSSKKRYAELVDQCGGLKKGXXXXXXXXX 122
            KIG S+YFWSLPSCAGNQLR+V ++LESD+Q S KR AELVDQC  LKKG         
Sbjct: 62  DKIGISIYFWSLPSCAGNQLRSVRQKLESDLQGSNKRLAELVDQCEALKKGREESEERTE 121

Query: 123 XXXXXXXXXXKHNELKEEMGQYADNDPAAFEAMKSYTAKTAQITSSRCDN 172
                     KH +LK EM Q+ADNDPA  EA ++      Q  +   DN
Sbjct: 122 ALTQLKDIEKKHKDLKNEMVQFADNDPATLEAKRNAIEVAHQSANRWTDN 171


>AT4G29170.2 | Symbols: ATMND1 | ATMND1 | chr4:14383594-14385128
           FORWARD
          Length = 215

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 80/156 (51%)

Query: 17  ILQIFYESQDFFXXXXXXXXXXXXXVIXXXXXXXXXXXXXXXXXXXXKIGTSVYFWSLPS 76
           +LQIFYESQDFF             VI                    KIG S+YFWSLPS
Sbjct: 1   MLQIFYESQDFFLLKELEKMGPKKGVISQSVKDVIQSLVDDDLVAKDKIGISIYFWSLPS 60

Query: 77  CAGNQLRNVYRRLESDVQSSKKRYAELVDQCGGLKKGXXXXXXXXXXXXXXXXXXXKHNE 136
           CAGNQLR+V ++LESD+Q S KR AELVDQC  LKKG                   KH +
Sbjct: 61  CAGNQLRSVRQKLESDLQGSNKRLAELVDQCEALKKGREESEERTEALTQLKDIEKKHKD 120

Query: 137 LKEEMGQYADNDPAAFEAMKSYTAKTAQITSSRCDN 172
           LK EM Q+ADNDPA  EA ++      Q  +   DN
Sbjct: 121 LKNEMVQFADNDPATLEAKRNAIEVAHQSANRWTDN 156