Jatropha Genome Database

JcCB0075691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075691.10 + phase: 0 /pseudo
         (131 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67500.1 | Symbols: VDAC2, ATVDAC2 | VDAC2 (VOLTAGE DEPENDENT...   132   6e-32
AT5G15090.1 | Symbols: VDAC3, ATVDAC3 | VDAC3 (VOLTAGE DEPENDENT...   105   9e-24
AT3G01280.1 | Symbols: VDAC1, ATVDAC1 | VDAC1 (VOLTAGE DEPENDENT...    98   1e-21
AT3G49920.1 | Symbols: VDAC5, ATVDAC5 | VDAC5 (VOLTAGE DEPENDENT...    89   5e-19
AT5G57490.1 | Symbols: VDAC4, ATVDAC4 | VDAC4 (VOLTAGE DEPENDENT...    75   8e-15

>AT5G67500.1 | Symbols: VDAC2, ATVDAC2 | VDAC2 (VOLTAGE DEPENDENT
           ANION CHANNEL 2); voltage-gated anion channel |
           chr5:26935223-26937123 FORWARD
          Length = 276

 Score =  132 bits (332), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 85/105 (80%)

Query: 3   SKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHK 62
           SKGPGLF+D GKKA+D+L +DY++DQKF+IS+ + SGVA+TS  ++KGG+   DV+TQ+K
Sbjct: 2   SKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQYK 61

Query: 63  FKNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           +KN   DVK+DT S++LTT+ LT+   STK IAS K+PDYNS K+
Sbjct: 62  YKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKL 106


>AT5G15090.1 | Symbols: VDAC3, ATVDAC3 | VDAC3 (VOLTAGE DEPENDENT
           ANION CHANNEL 3); voltage-gated anion channel |
           chr5:4889641-4891389 REVERSE
          Length = 274

 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 73/103 (70%)

Query: 4   KGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHKF 63
           KGPGL+++ GKKARD+L++DY  DQKF++++ + +GVAIT+    KG L +GDV+TQ K 
Sbjct: 3   KGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKN 62

Query: 64  KNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGK 106
            N + DVK+ T S++LTTL   +     KVI   KLPD+ SGK
Sbjct: 63  NNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGK 105


>AT3G01280.1 | Symbols: VDAC1, ATVDAC1 | VDAC1 (VOLTAGE DEPENDENT
           ANION CHANNEL 1); voltage-gated anion channel |
           chr3:85754-87612 FORWARD
          Length = 276

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 74/104 (71%)

Query: 4   KGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHKF 63
           KGPGL+++ GKKARD+L+KD+++DQKF+I++ + +GVAITS   +KG L +GDV+ Q + 
Sbjct: 3   KGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRR 62

Query: 64  KNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           KN + D+K+ T S  L T  + +     + I S K+PD NSGKV
Sbjct: 63  KNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKV 106


>AT3G49920.1 | Symbols: VDAC5, ATVDAC5 | VDAC5 (VOLTAGE DEPENDENT
          ANION CHANNEL 5); voltage-gated anion channel |
          chr3:18505836-18507699 REVERSE
          Length = 226

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 3  SKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHK 62
          SKGPGLF+D GK A+D+L +DYSTDQKF+IS+ + SGVA+TS  ++ G L   +V+TQ+K
Sbjct: 2  SKGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVATQYK 61

Query: 63 FKNGSLDVKLDTQSNI 78
          ++N   DVK+DT  N+
Sbjct: 62 YRNTFFDVKIDTDFNV 77


>AT5G57490.1 | Symbols: VDAC4, ATVDAC4 | VDAC4 (VOLTAGE DEPENDENT
           ANION CHANNEL 4); voltage-gated anion channel |
           chr5:23283895-23285335 REVERSE
          Length = 274

 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 63/102 (61%)

Query: 6   PGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHKFKN 65
           P  F+D GKKA+D+L KDY  D KF ++  + +G    +  ++K     GD+ST +K +N
Sbjct: 5   PAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLYKGQN 64

Query: 66  GSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
             +D+K+D+ S++ T + L +   S K + S K+PD+ SGK+
Sbjct: 65  TIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKL 106