Jatropha Genome Database

JcCB0075571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075571.10 - phase: 0 /partial
         (700 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); p...   146   4e-35
AT3G21320.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   134   3e-31

>AT2G25930.1 | Symbols: ELF3, PYK20 | ELF3 (EARLY FLOWERING 3);
           protein C-terminus binding / transcription factor |
           chr2:11059459-11063178 FORWARD
          Length = 695

 Score =  146 bits (369), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/300 (37%), Positives = 160/300 (53%), Gaps = 48/300 (16%)

Query: 352 DIENVIKTNQDKY-GSLQVGNVQRRDDVSKTSMMDSVSAFGITSDNVIRVIGEGQFWEAR 410
           DI+N  + ++ +   SLQ  N +  DDVS  SM+DS+S+  ++ D+V+ ++G+ +FW AR
Sbjct: 275 DIDNDREYSKSRACASLQQINEEASDDVSDDSMVDSISSIDVSPDDVVGILGQKRFWRAR 334

Query: 411 RAIVKQQREFKIQVFELHRLIKVQMLIAGSPDLLLEDNIYLAKASLEVSPVKKVASENAR 470
           +AI  QQR F +Q+FELHRLIKVQ LIA SPDLLL++  +L K S +  PVKK+      
Sbjct: 335 KAIANQQRVFAVQLFELHRLIKVQKLIAASPDLLLDEISFLGKVSAKSYPVKKLLPSEFL 394

Query: 471 EQPPL---IDKQKDVSQKPYPSAEFADENAVVKLPLPHVNNETSKGLLTQQSNDGSHSEG 527
            +PPL   + KQ+  S+K        D+         H    +++ ++ + SN G H + 
Sbjct: 395 VKPPLPHVVVKQRGDSEK-------TDQ---------HKMESSAENVVGRLSNQGHHQQS 438

Query: 528 VLLSPIAANTRQSP----WCFPPQ----GN--QWLVPVMSHSEGLVYKPYAGPCPPTAGF 577
             + P A N   SP    +CFPPQ    GN  QWL+PVMS SEGL+YKP+ G        
Sbjct: 439 NYM-PFANNPPASPAPNGYCFPPQPPPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGHYG 497

Query: 578 IAPVYGKCGPMNLPAGGGDFLNAACGVQQGIGILPMIPPLGQTYFPPHAM--PVMSPSIS 635
               +    PM +P               G+G     PP G  YFPP+ M   +M+P  S
Sbjct: 498 GYYGHYMPTPMVMPQ-----------YHPGMG----FPPPGNGYFPPYGMMPTIMNPYCS 542



 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 45/49 (91%)

Query: 1  MRGPKDEEKIMSPIFPRLHVNDTEKGGPKAPPRNKMALYEQLSIPSQRF 49
          M+  KDEEKI+ P+FPRLHVND +KGGP+APPRNKMALYEQLSIPSQRF
Sbjct: 1  MKRGKDEEKILEPMFPRLHVNDADKGGPRAPPRNKMALYEQLSIPSQRF 49


>AT3G21320.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: ELF3 (EARLY FLOWERING 3); protein
           C-terminus binding / transcription factor
           (TAIR:AT2G25930.1); Has 39 Blast hits to 37 proteins in
           14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi
           - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr3:7499408-7501312 REVERSE
          Length = 540

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 136/281 (48%), Gaps = 62/281 (22%)

Query: 355 NVIKTNQDKYGSLQVGN--------VQRRDDV-SKTSMMDSVSAFGITSDNVIRVIGEGQ 405
           NV+KT   +    +  N        + RR+ V S  S ++S+S    +S ++ RVIGE +
Sbjct: 191 NVMKTQSYRRNFAEFNNETQKKPKTLPRREQVASNCSAIESLSGISASSYDIARVIGEKR 250

Query: 406 FWEARRAIVKQQREFKIQVFELHRLIKVQMLIAGSPDLLLEDNIYLAK-ASLEVSPVKKV 464
           FW+ R  ++ QQ+ F  QVFELHRLI VQ ++A SP+L LE  +   K  ++  S    +
Sbjct: 251 FWKMRTYMINQQKIFAGQVFELHRLIMVQKMVAKSPNLFLESKLNGVKHGTMRSSHQLAM 310

Query: 465 ASENAREQPPLIDKQKDVSQKPYPSAEFADENAVVKLPLPHVNNETSKGLLTQQSNDGSH 524
           A+   R+  P  +  K V ++ YP      E+   KLPLP ++ E    +  QQ      
Sbjct: 311 AASKVRK--PNTENHKPVPEE-YP------EHMKPKLPLPSISKELVTPIWPQQ------ 355

Query: 525 SEGVLLSPIAANTRQSPWCFPPQGNQWLVPVMSHSEGLVYKPYAGPCPP-TAGFIAPVYG 583
                               PP GNQWLVPV++ S+GLVYKP+ GPCPP ++ F+ PVYG
Sbjct: 356 ------------------LLPPPGNQWLVPVITDSDGLVYKPFPGPCPPSSSAFMVPVYG 397

Query: 584 KCGPMNLPAGGGDFLNAACGVQQGIGILPMIPPLGQTYFPP 624
           +           D L             P+  P   +YFPP
Sbjct: 398 Q-----------DSLETPFR-------FPVSSPFSHSYFPP 420