Jatropha Genome Database
- JcCB0075281.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0075281.20 - phase: 0 /TE/partial
(635 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 957 0.0
AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative | chr1... 951 0.0
AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 882 0.0
AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA helic... 371 e-103
AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 357 1e-98
AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20)... 350 2e-96
AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 314 1e-85
AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 306 3e-83
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 306 3e-83
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 306 3e-83
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 306 3e-83
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICAS... 306 3e-83
AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA helic... 291 7e-79
AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 282 4e-76
AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 282 5e-76
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 277 1e-74
AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 277 2e-74
AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11)... 275 7e-74
AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11)... 275 7e-74
AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11)... 275 7e-74
AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR... 270 3e-72
AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 260 2e-69
AT1G28180.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 239 5e-63
AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA h... 228 6e-60
AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIA... 228 1e-59
AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 222 5e-58
AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 219 3e-57
AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138)... 219 3e-57
AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 211 2e-54
AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28... 210 2e-54
AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10... 209 3e-54
AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 195 8e-50
AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 195 1e-49
AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 195 1e-49
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 194 1e-49
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 194 2e-49
AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein ... 193 3e-49
AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein ... 193 3e-49
AT1G72730.1 | Symbols: | eukaryotic translation initiation fact... 192 4e-49
AT3G19760.1 | Symbols: | eukaryotic translation initiation fact... 192 5e-49
AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 191 9e-49
AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 191 1e-48
AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 191 1e-48
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC ... 190 2e-48
AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 187 2e-47
AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase... 186 3e-47
AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein ... 180 3e-45
AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/ DE... 178 1e-44
AT1G51380.1 | Symbols: | eukaryotic translation initiation fact... 175 9e-44
AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 169 7e-42
AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 164 2e-40
AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18... 160 3e-39
AT5G11170.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 158 9e-39
AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 158 9e-39
AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative | chr5... 158 1e-38
AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) | chr5:27... 158 1e-38
AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE SU... 154 2e-37
AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 149 6e-36
AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 147 2e-35
AT5G11170.2 | Symbols: | ATP binding / ATP-dependent helicase/ ... 146 3e-35
AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 145 6e-35
AT3G53110.1 | Symbols: LOS4 | LOS4 (LOW EXPRESSION OF OSMOTICALL... 145 1e-34
AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586)... 144 1e-34
AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 140 3e-33
AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 139 6e-33
AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16... 131 2e-30
AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 122 1e-27
AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17... 121 2e-27
AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 119 5e-27
AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 104 2e-22
AT4G15850.1 | Symbols: ATRH1 | ATRH1; ATP-dependent helicase/ DE... 102 9e-22
AT5G11200.3 | Symbols: | DEAD/DEAH box helicase, putative | chr... 87 3e-17
AT5G11200.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 87 3e-17
AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22... 74 2e-13
AT2G28600.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 67 3e-11
AT5G19210.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 60 3e-09
AT1G27880.1 | Symbols: | ATP-dependent DNA helicase, putative |... 54 3e-07
>AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:7285342-7288842 FORWARD
Length = 1166
Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/640 (77%), Positives = 529/640 (82%), Gaps = 19/640 (2%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV 63
SKILDT+KKLNY+KPMPIQ QALPI+MSGRDCIG+AKTGSGKTL FVLPMLRHIKDQPPV
Sbjct: 538 SKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV 597
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
EAGDGPIGL+MAPTRELVQQIHSDI+KF+K LGIRCVPVYGGSGVAQQISELKRGTEIVV
Sbjct: 598 EAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVV 657
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
CTPGRMIDILCTS GKITNLRRVT+LVMDEADRMFDMGFEPQITRI+QNIRP+RQTVLFS
Sbjct: 658 CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFS 717
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
ATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQLVEV KG
Sbjct: 718 ATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKG 777
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
KIL+FVQSQ+KCDAL+RD++K YPCLSLHG KDQTDRESTISDFK++VCNLLIATS+AA
Sbjct: 778 KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAA 837
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALEL 363
RGLDVKELELV+NFD PNHYEDYVHRVGRTGRAGRKGCA+TFISE+DA+YAPDL KALEL
Sbjct: 838 RGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALEL 897
Query: 364 SEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRIAAKKAQAKEYGF 423
SEQ VPDDLKALADGFM KV QG+EQAHGTGYGGSGFKFNEEE+E R AAKKAQAKEYGF
Sbjct: 898 SEQPVPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKEYGF 957
Query: 424 XXXXXXXXXXXXGVRKA-GGDISRQAAFAQQLFAITAXXXXXXXXXXXXXXXXXXXXXXX 482
VRKA GG+IS+Q A Q+ AI A
Sbjct: 958 EEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVTANQL---- 1013
Query: 483 XXXMGLTIPGAATAVPGAGLPVV------GNDNTAKALAAAINLQHNLAKIQADAMPEHY 536
L G A+PG LPV A A+ AA+NLQHNLAKIQADAMPEHY
Sbjct: 1014 -----LANGGGLAAMPGV-LPVTVPTLPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHY 1067
Query: 537 EAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEG 596
EAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ++P GRIPGPGERKLYLFIEG
Sbjct: 1068 EAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGPGERKLYLFIEG 1127
Query: 597 PSETSVKKAKTELKRVLEDITNQAL-SLPGGAQPGRYSVI 635
PSE SVK AK ELKRVLEDITNQA+ SLPGGA GRYSV+
Sbjct: 1128 PSEKSVKHAKAELKRVLEDITNQAMSSLPGGAS-GRYSVL 1166
>AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative |
chr1:7286356-7288842 FORWARD
Length = 828
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/640 (77%), Positives = 529/640 (82%), Gaps = 19/640 (2%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV 63
SKILDT+KKLNY+KPMPIQ QALPI+MSGRDCIG+AKTGSGKTL FVLPMLRHIKDQPPV
Sbjct: 200 SKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV 259
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
EAGDGPIGL+MAPTRELVQQIHSDI+KF+K LGIRCVPVYGGSGVAQQISELKRGTEIVV
Sbjct: 260 EAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVV 319
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
CTPGRMIDILCTS GKITNLRRVT+LVMDEADRMFDMGFEPQITRI+QNIRP+RQTVLFS
Sbjct: 320 CTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFS 379
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
ATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQLVEV KG
Sbjct: 380 ATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKG 439
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
KIL+FVQSQ+KCDAL+RD++K YPCLSLHG KDQTDRESTISDFK++VCNLLIATS+AA
Sbjct: 440 KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAA 499
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALEL 363
RGLDVKELELV+NFD PNHYEDYVHRVGRTGRAGRKGCA+TFISE+DA+YAPDL KALEL
Sbjct: 500 RGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALEL 559
Query: 364 SEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRIAAKKAQAKEYGF 423
SEQ VPDDLKALADGFM KV QG+EQAHGTGYGGSGFKFNEEE+E R AAKKAQAKEYGF
Sbjct: 560 SEQPVPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEVRKAAKKAQAKEYGF 619
Query: 424 XXXXXXXXXXXXGVRKA-GGDISRQAAFAQQLFAITAXXXXXXXXXXXXXXXXXXXXXXX 482
VRKA GG+IS+Q A Q+ AI A
Sbjct: 620 EEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVTANQL---- 675
Query: 483 XXXMGLTIPGAATAVPGAGLPVV------GNDNTAKALAAAINLQHNLAKIQADAMPEHY 536
L G A+PG LPV A A+ AA+NLQHNLAKIQADAMPEHY
Sbjct: 676 -----LANGGGLAAMPGV-LPVTVPTLPSEGAGRAAAMVAAMNLQHNLAKIQADAMPEHY 729
Query: 537 EAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEG 596
EAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ++P GRIPGPGERKLYLFIEG
Sbjct: 730 EAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGPGERKLYLFIEG 789
Query: 597 PSETSVKKAKTELKRVLEDITNQAL-SLPGGAQPGRYSVI 635
PSE SVK AK ELKRVLEDITNQA+ SLPGGA GRYSV+
Sbjct: 790 PSEKSVKHAKAELKRVLEDITNQAMSSLPGGAS-GRYSVL 828
>AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2949152-2952205 REVERSE
Length = 989
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/632 (71%), Positives = 492/632 (77%), Gaps = 47/632 (7%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV 63
SKILDT+KKLNY+KPMPIQAQALPI+MSGRDCIG+AKTGSGKTL FVLPMLRHIKDQPPV
Sbjct: 405 SKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV 464
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
EAGDGPIGL+MAPTRELVQQI+SDI+KF+K LGI CVPVYGGSGVAQQISELKRGTEIVV
Sbjct: 465 EAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVV 524
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
CTPGRMIDILCTS GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS
Sbjct: 525 CTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 584
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
ATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQLVE+ KG
Sbjct: 585 ATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWYEKG 644
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
K+L+FV+SQ+K +ISDFKS+VCNLLIATS+AA
Sbjct: 645 KVLVFVRSQEK-----------------------------SISDFKSDVCNLLIATSVAA 675
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALEL 363
RGLDVKELELV+NFD PNHYEDYVHRVGRTGRAGRKGCA+TFISE+DA+YAPDL KALEL
Sbjct: 676 RGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALEL 735
Query: 364 SEQVVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRIAAKKAQAKEYGF 423
SEQ VPDD+KA+A+GFMAKV QG+EQAHGTGYGGSGFKFNEEEDE R AAKKAQAKEYGF
Sbjct: 736 SEQPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGF 795
Query: 424 XXXXXXXXXXXXGVRKAGGDISRQAAFAQQLFAITAXXXXXXXXXXXXXXXXXXXXXXXX 483
VRKAGGDIS+Q Q+ AI +
Sbjct: 796 EEEKSDSEDENDVVRKAGGDISQQQITLAQIAAIASAASKAPVTANQ------------- 842
Query: 484 XXMGLTIPGAATAVPGAGLPVVGNDNTAKALAAAINLQHNLAKIQADAMPEHYEAELEIN 543
+P G+P A+ AA N+Q LAKIQADA+PEHYEAELEIN
Sbjct: 843 -----LLPNGGGLATEPGIPPTDGAGRVAAMIAAANVQQYLAKIQADAIPEHYEAELEIN 897
Query: 544 DFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEGPSETSVK 603
DFPQNARWKVTHKETLGPISEW+GA+ITTRG+++ GRIPGP ERKLYLF+EGP+E SVK
Sbjct: 898 DFPQNARWKVTHKETLGPISEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPTEISVK 957
Query: 604 KAKTELKRVLEDITNQALSLPGGAQPGRYSVI 635
AK ELKRVLEDITNQ SLPGGAQ GRYSV+
Sbjct: 958 TAKAELKRVLEDITNQTFSLPGGAQSGRYSVL 989
>AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25318967-25322071
REVERSE
Length = 591
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/372 (49%), Positives = 252/372 (67%), Gaps = 6/372 (1%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
IL+ I KL + +P PIQAQ P+ + GRD IGIA+TGSGKTLA++LP L H+ QP +
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ 235
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
DGPI LI+APTREL QI + +KF G+R +YGG+ QI +L+RG EIV+ T
Sbjct: 236 DDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 295
Query: 126 PGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 184
PGR+ID+L C TNL+RVTYLV+DEADRM DMGFEPQI +IV IRPDRQT+L+SA
Sbjct: 296 PGRLIDMLECQH----TNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSA 351
Query: 185 TFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
T+PR+VE LAR+ L P + +G + N+ I Q++E+
Sbjct: 352 TWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGS 411
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
KILIFV+++ CD + R L G+P L++HG K Q++R+ +++FKS ++ AT +AA
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAA 471
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALEL 363
RGLDVK+++ V+N+D PN EDY+HR+GRTGRAG KG A TF + ++A++A +L K L+
Sbjct: 472 RGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQE 531
Query: 364 SEQVVPDDLKAL 375
+ QVVP L AL
Sbjct: 532 AGQVVPPTLSAL 543
>AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:19429083-19431617 REVERSE
Length = 760
Score = 357 bits (916), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/375 (49%), Positives = 246/375 (65%), Gaps = 5/375 (1%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV 63
S+I+ IKK Y+KP IQ QALPIV+SGRD IGIAKTGSGKT AFVLPM+ HI DQP +
Sbjct: 237 SQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPEL 296
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
+ +GPIG+I APTREL QI + KKF+K G+R VYGG +Q ELK G EIVV
Sbjct: 297 QRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVV 356
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
TPGR+ID+L K + R +YLV+DEADRMFD+GFEPQ+ IV IRPDRQT+LFS
Sbjct: 357 ATPGRLIDMLKM---KALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFS 413
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVX-XXXXXXXXXXXXXXXXXXK 242
AT P +VE LAR++L+ P+ + VG + N+DITQ+V V +
Sbjct: 414 ATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDE 473
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
G +L+F + D + L + + +LHG KDQ R T+ FKS V ++LIAT +A
Sbjct: 474 GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVA 533
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAG-RKGCAITFISEEDARYAPDLAKAL 361
ARGLD+K L+ V+N+D+ + +VHR+GRTGRAG R G A T +++ +AR+A +L +L
Sbjct: 534 ARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSL 593
Query: 362 ELSEQVVPDDLKALA 376
+ Q VP +L LA
Sbjct: 594 VAAGQNVPPELTDLA 608
>AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20) |
chr1:20574634-20577141 FORWARD
Length = 501
Score = 350 bits (897), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 169/371 (45%), Positives = 246/371 (66%), Gaps = 4/371 (1%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L+ +KK + +P PIQ+Q P+ M GRD IGIA+TGSGKTL+++LP + H+ QP +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
GDGPI L++APTREL QI + KF I+ +YGG Q+ +L++G EIV+ T
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR+ID++ ++ TNLRRVTYLV+DEADRM DMGF+PQI +IV +IRPDRQT+ +SAT
Sbjct: 230 PGRLIDMMESNN---TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSAT 286
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGK 244
+P++VE L++K L P ++ +G + N+ I Q+V+V +
Sbjct: 287 WPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSR 346
Query: 245 ILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAAR 304
IL+F+ ++ CD + R L G+P LS+HG K Q +R+ +S+F+S ++ AT +AAR
Sbjct: 347 ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAAR 406
Query: 305 GLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELS 364
GLDVK+++ VIN+D P EDYVHR+GRTGRAG KG A TF + +AR+A +L L+ +
Sbjct: 407 GLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEA 466
Query: 365 EQVVPDDLKAL 375
Q V +L ++
Sbjct: 467 GQKVSPELASM 477
>AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1088
Score = 314 bits (805), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/377 (43%), Positives = 235/377 (62%), Gaps = 13/377 (3%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLP---MLRHIKDQP 61
+IL + + P PIQAQ PI + RD + IAKTGSGKTL +++P +LRH ++
Sbjct: 445 EILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRN-- 502
Query: 62 PVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEI 121
++ +GP LI+APTREL QI + +F + I C +YGG+ Q+ EL+RG +I
Sbjct: 503 --DSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADI 560
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 181
VV TPGR+ DIL K+ + ++V+ LV+DEADRM DMGFEPQI +IV I P RQT++
Sbjct: 561 VVATPGRLNDILEM---KMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLM 617
Query: 182 FSATFPRQVEILARKVLNKPVEIQVG--GRSVVNKDITQLVEVXXXXXXXXXXXXXXXXX 239
++AT+P++V +A +L PV++ +G NK ITQ VEV
Sbjct: 618 YTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQ 677
Query: 240 XXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 299
K++IF ++ CD L R + +H + + +HG K Q +R+ ++ F+S +LIAT
Sbjct: 678 ERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIAT 736
Query: 300 SIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAK 359
+AARGLD+K++ +VIN+D P EDYVHR+GRTGRAG G A TF +E+D +YAPDL K
Sbjct: 737 DVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIK 796
Query: 360 ALELSEQVVPDDLKALA 376
LE + Q VP ++ +A
Sbjct: 797 VLEGANQQVPPQVRDIA 813
>AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding / protein binding |
chr5:4711271-4714713 FORWARD
Length = 712
Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/364 (43%), Positives = 228/364 (62%), Gaps = 7/364 (1%)
Query: 15 YDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDGPIGLIM 74
+ P PIQAQ+ PI M RD + IAKTGSGKTL +++P H++ + ++ GP L++
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQ-RIHNDSRMGPTILVL 307
Query: 75 APTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 134
+PTREL QI + KF K I C +YGG+ Q+ E++RG +IVV TPGR+ DIL
Sbjct: 308 SPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILE 367
Query: 135 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 194
K +L +V+YLV+DEADRM DMGFEPQI +IV + RQT++++AT+P++V +A
Sbjct: 368 M---KRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA 424
Query: 195 RKVLNKPVEIQVGG--RSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKILIFVQSQ 252
+L P ++ +G V NK ITQ +EV KI+IF ++
Sbjct: 425 ADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTK 484
Query: 253 DKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELE 312
CD L R+L + + ++HG K Q +R+ ++ F+S +L+AT +AARGLDVK++
Sbjct: 485 RMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIR 543
Query: 313 LVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELSEQVVPDDL 372
+V+N+D PN EDYVHR+GRTGRAG G A TF ++DA++A DL K LE + Q VP +
Sbjct: 544 VVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQV 603
Query: 373 KALA 376
+ +A
Sbjct: 604 REMA 607
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 618
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 234/374 (62%), Gaps = 7/374 (1%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L + + P PIQAQ+ PI M GRD + IAKTGSGKTL +++P H++ + +
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQ-RIRND 226
Query: 65 AGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVC 124
+ GP L+++PTREL QI + KF + I C +YGG+ Q+ +L+RG +IVV
Sbjct: 227 SRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVA 286
Query: 125 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 184
TPGR+ DIL + +LR+++YLV+DEADRM DMGFEPQI +IV+ I RQT++++A
Sbjct: 287 TPGRLNDILEM---RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTA 343
Query: 185 TFPRQVEILARKVLNKPVEIQVGG--RSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXK 242
T+P+ V +A +L P ++ +G V NK ITQ +EV
Sbjct: 344 TWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPG 403
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
K++IF ++ CD L R+L + + ++HG K Q +R++ ++ F+S +L+AT +A
Sbjct: 404 SKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALE 362
ARGLDVK++ V+N+D PN EDYVHR+GRTGRAG G A TF ++D+++A DL K LE
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 363 LSEQVVPDDLKALA 376
+ Q VP ++ +A
Sbjct: 523 GANQRVPPQIREMA 536
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 234/374 (62%), Gaps = 7/374 (1%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L + + P PIQAQ+ PI M GRD + IAKTGSGKTL +++P H++ + +
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQ-RIRND 226
Query: 65 AGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVC 124
+ GP L+++PTREL QI + KF + I C +YGG+ Q+ +L+RG +IVV
Sbjct: 227 SRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVA 286
Query: 125 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 184
TPGR+ DIL + +LR+++YLV+DEADRM DMGFEPQI +IV+ I RQT++++A
Sbjct: 287 TPGRLNDILEM---RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTA 343
Query: 185 TFPRQVEILARKVLNKPVEIQVGG--RSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXK 242
T+P+ V +A +L P ++ +G V NK ITQ +EV
Sbjct: 344 TWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPG 403
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
K++IF ++ CD L R+L + + ++HG K Q +R++ ++ F+S +L+AT +A
Sbjct: 404 SKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALE 362
ARGLDVK++ V+N+D PN EDYVHR+GRTGRAG G A TF ++D+++A DL K LE
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 363 LSEQVVPDDLKALA 376
+ Q VP ++ +A
Sbjct: 523 GANQRVPPQIREMA 536
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 234/374 (62%), Gaps = 7/374 (1%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L + + P PIQAQ+ PI M GRD + IAKTGSGKTL +++P H++ + +
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQ-RIRND 226
Query: 65 AGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVC 124
+ GP L+++PTREL QI + KF + I C +YGG+ Q+ +L+RG +IVV
Sbjct: 227 SRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVA 286
Query: 125 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 184
TPGR+ DIL + +LR+++YLV+DEADRM DMGFEPQI +IV+ I RQT++++A
Sbjct: 287 TPGRLNDILEM---RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTA 343
Query: 185 TFPRQVEILARKVLNKPVEIQVGG--RSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXK 242
T+P+ V +A +L P ++ +G V NK ITQ +EV
Sbjct: 344 TWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPG 403
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
K++IF ++ CD L R+L + + ++HG K Q +R++ ++ F+S +L+AT +A
Sbjct: 404 SKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALE 362
ARGLDVK++ V+N+D PN EDYVHR+GRTGRAG G A TF ++D+++A DL K LE
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 363 LSEQVVPDDLKALA 376
+ Q VP ++ +A
Sbjct: 523 GANQRVPPQIREMA 536
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE
1); ATP-dependent RNA helicase/ ATPase |
chr3:213077-216142 REVERSE
Length = 619
Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/374 (41%), Positives = 234/374 (62%), Gaps = 7/374 (1%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L + + P PIQAQ+ PI M GRD + IAKTGSGKTL +++P H++ + +
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQ-RIRND 226
Query: 65 AGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVC 124
+ GP L+++PTREL QI + KF + I C +YGG+ Q+ +L+RG +IVV
Sbjct: 227 SRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVA 286
Query: 125 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 184
TPGR+ DIL + +LR+++YLV+DEADRM DMGFEPQI +IV+ I RQT++++A
Sbjct: 287 TPGRLNDILEM---RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTA 343
Query: 185 TFPRQVEILARKVLNKPVEIQVGG--RSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXK 242
T+P+ V +A +L P ++ +G V NK ITQ +EV
Sbjct: 344 TWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPG 403
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
K++IF ++ CD L R+L + + ++HG K Q +R++ ++ F+S +L+AT +A
Sbjct: 404 SKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALE 362
ARGLDVK++ V+N+D PN EDYVHR+GRTGRAG G A TF ++D+++A DL K LE
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Query: 363 LSEQVVPDDLKALA 376
+ Q VP ++ +A
Sbjct: 523 GANQRVPPQIREMA 536
>AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25319798-25322071
REVERSE
Length = 484
Score = 291 bits (746), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 148/303 (48%), Positives = 200/303 (66%), Gaps = 6/303 (1%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
IL+ I KL + +P PIQAQ P+ + GRD IGIA+TGSGKTLA++LP L H+ QP +
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ 235
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
DGPI LI+APTREL QI + +KF G+R +YGG+ QI +L+RG EIV+ T
Sbjct: 236 DDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 295
Query: 126 PGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 184
PGR+ID+L C TNL+RVTYLV+DEADRM DMGFEPQI +IV IRPDRQT+L+SA
Sbjct: 296 PGRLIDMLECQH----TNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSA 351
Query: 185 TFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
T+PR+VE LAR+ L P + +G + N+ I Q++E+
Sbjct: 352 TWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGS 411
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
KILIFV+++ CD + R L G+P L++HG K Q++R+ +++FKS ++ AT +AA
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAA 471
Query: 304 RGL 306
RGL
Sbjct: 472 RGL 474
>AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:14265679-14267880 REVERSE
Length = 733
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 155/389 (39%), Positives = 221/389 (56%), Gaps = 24/389 (6%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV 63
S++L +++ Y KP PIQ A+P+ + RD IGIA+TGSGKT AFVLPML +I PP+
Sbjct: 322 SELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPM 381
Query: 64 ---EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTE 120
+GP ++MAPTREL QQI + KFA LG R + GG + +Q ++ +G E
Sbjct: 382 SEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCE 441
Query: 121 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV-----QNIRP 175
IV+ TPGR+ID L + L + Y+V+DEADRM DMGFEPQ+ ++ N++P
Sbjct: 442 IVIATPGRLIDCL---ERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKP 498
Query: 176 D------------RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVX 223
+ R T +FSAT P VE LARK L PV + +G I+Q V +
Sbjct: 499 ENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMM 558
Query: 224 XXXXXXXXXXXXXXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRES 283
K I +FV ++ CD++ ++L K GY +LHG K Q RE
Sbjct: 559 KESEKFFRLQKLLDELGEKTAI-VFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREI 617
Query: 284 TISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAI 343
++ F++ N+L+AT + RG+D+ ++ VIN+D+P H E Y HR+GRTGRAG+ G A
Sbjct: 618 SLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVAT 677
Query: 344 TFISEEDARYAPDLAKALELSEQVVPDDL 372
+F++ D DL + L S VP +L
Sbjct: 678 SFLTLHDTEVFYDLKQMLVQSNSAVPPEL 706
>AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:21657099-21660352 FORWARD
Length = 646
Score = 282 bits (721), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 228/383 (59%), Gaps = 18/383 (4%)
Query: 9 TIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQ----PPV 63
I++ Y KP P+Q A+PI+ +GRD + A+TGSGKT AF P++ I KDQ P
Sbjct: 160 NIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRG 219
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
G P+ +I++PTREL QIH + +KF+ G++ V YGG+ V QQI EL+RG +I+V
Sbjct: 220 VRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILV 279
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ--NIRPD--RQT 179
TPGR+ D+L G+++ L+ V +L +DEADRM DMGFEPQI +IVQ ++ P RQT
Sbjct: 280 ATPGRLNDLL--ERGRVS-LQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQT 336
Query: 180 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXX 239
+LFSATFPR+++ LA L+ + + VG I Q VE
Sbjct: 337 MLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQ 396
Query: 240 XXKGK------ILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 293
G L+FV+++ D+L L +G+P ++HG + Q +RE + FK+
Sbjct: 397 RENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRT 456
Query: 294 NLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARY 353
+L+AT +AARGLD+ + V+NFD+PN +DYVHR+GRTGRAG G A F ++ +
Sbjct: 457 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTM 516
Query: 354 APDLAKALELSEQVVPDDLKALA 376
A LA+ ++ + Q VPD L A
Sbjct: 517 AKPLAELMQEANQEVPDWLTRYA 539
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD
Length = 591
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/432 (37%), Positives = 241/432 (55%), Gaps = 20/432 (4%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQP---P 62
+LDT+K+ +P PIQ Q LP++++GRD IGIA TGSGKTL FVLPM+ + P
Sbjct: 157 VLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMP 216
Query: 63 VEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVL------GIRCVPVYGGSGVAQQISELK 116
+ AG+GPIGLI+ P+REL +Q + +++F L +R + GG + Q+ +K
Sbjct: 217 IAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVK 276
Query: 117 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 176
RG IVV TPGR+ D+L K +L YL +DEADR+ D+GFE I + + +
Sbjct: 277 RGVHIVVATPGRLKDML---AKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQ 333
Query: 177 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXX 236
RQT+LFSAT P +++I AR L KPV + VG N D+ Q EV
Sbjct: 334 RQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQ--EVEYVKQEAKIVYLLE 391
Query: 237 XXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 296
+LIF +++ D + LL G +++HG KDQ DRE IS FK+ ++L
Sbjct: 392 CLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVL 451
Query: 297 IATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYA-P 355
+AT +A++GLD +++ VIN+D+P E+YVHR+GRTGR G+ G A TFI++ +
Sbjct: 452 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLL 511
Query: 356 DLAKALELSEQVVPDDLKALADGF-MAKVNQGLEQAHGTGY-GGSGFKFNE---EEDEKR 410
DL L+ ++Q +P L L D A+ G Y GG G + + E +K
Sbjct: 512 DLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVKGCAYCGGLGHRIRDCPKLEHQKS 571
Query: 411 IAAKKAQAKEYG 422
+A ++ +G
Sbjct: 572 VAISNSRKDYFG 583
>AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:17705382-17708744 FORWARD
Length = 633
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 223/383 (58%), Gaps = 18/383 (4%)
Query: 9 TIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDG 68
I++ Y KP P+Q A+PI++ GRD + A+TGSGKT AF P++ I V+ G
Sbjct: 173 NIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRG 232
Query: 69 -----PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
P+ +I++PTREL QIH + KKF+ G++ V YGG+ + QQ+ EL+RG +I+V
Sbjct: 233 SRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILV 292
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI----RPDRQT 179
TPGR+ D+L + +++ + +L +DEADRM DMGFEPQI +IV+ + R RQT
Sbjct: 293 ATPGRLNDLLERAR---VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 349
Query: 180 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXX 239
+LFSATFPR+++ LA L + + VG I Q VE
Sbjct: 350 LLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQ 409
Query: 240 XXKG------KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 293
G L+FV+++ D+L L +G+P S+HG + Q +RE + FKS
Sbjct: 410 RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRT 469
Query: 294 NLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARY 353
+L+AT +AARGLD+ + V+NFD+PN +DYVHR+GRTGRAG+ G A F ++ +
Sbjct: 470 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSL 529
Query: 354 APDLAKALELSEQVVPDDLKALA 376
A LA+ ++ + Q VP+ L A
Sbjct: 530 ARPLAELMQEANQEVPEWLTRYA 552
>AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 275 bits (703), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 223/381 (58%), Gaps = 16/381 (4%)
Query: 9 TIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDG 68
I++ Y +P P+Q A+PI+++ RD + A+TGSGKT AF P++ I VE G
Sbjct: 165 NIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRG 224
Query: 69 -----PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
P +I++PTREL QIH + KKF+ G++ V YGG+ + QQ+ EL+RG +I+V
Sbjct: 225 SRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILV 284
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI----RPDRQT 179
TPGR+ D+L + +++ + +L +DEADRM DMGFEPQI +IV+ + R RQT
Sbjct: 285 ATPGRLNDLLERAR---VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 341
Query: 180 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXX----XX 235
+LFSATFP Q++ LA ++ + + VG ITQ VE
Sbjct: 342 MLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQ 401
Query: 236 XXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 295
+ L+FV+++ D L L + +P S+HG + Q +RE + FK+ +
Sbjct: 402 RETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPI 461
Query: 296 LIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAP 355
L+AT +AARGLD+ + V+NFD+PN +DYVHR+GRTGRAG+ G A F +E +A+ A
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 521
Query: 356 DLAKALELSEQVVPDDLKALA 376
LA+ ++ + Q VP+ L A
Sbjct: 522 SLAELMQEANQEVPEWLTRYA 542
>AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 275 bits (703), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 223/381 (58%), Gaps = 16/381 (4%)
Query: 9 TIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDG 68
I++ Y +P P+Q A+PI+++ RD + A+TGSGKT AF P++ I VE G
Sbjct: 165 NIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRG 224
Query: 69 -----PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
P +I++PTREL QIH + KKF+ G++ V YGG+ + QQ+ EL+RG +I+V
Sbjct: 225 SRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILV 284
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI----RPDRQT 179
TPGR+ D+L + +++ + +L +DEADRM DMGFEPQI +IV+ + R RQT
Sbjct: 285 ATPGRLNDLLERAR---VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 341
Query: 180 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXX----XX 235
+LFSATFP Q++ LA ++ + + VG ITQ VE
Sbjct: 342 MLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQ 401
Query: 236 XXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 295
+ L+FV+++ D L L + +P S+HG + Q +RE + FK+ +
Sbjct: 402 RETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPI 461
Query: 296 LIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAP 355
L+AT +AARGLD+ + V+NFD+PN +DYVHR+GRTGRAG+ G A F +E +A+ A
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 521
Query: 356 DLAKALELSEQVVPDDLKALA 376
LA+ ++ + Q VP+ L A
Sbjct: 522 SLAELMQEANQEVPEWLTRYA 542
>AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21640608-21643464 FORWARD
Length = 612
Score = 275 bits (703), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 223/381 (58%), Gaps = 16/381 (4%)
Query: 9 TIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDG 68
I++ Y +P P+Q A+PI+++ RD + A+TGSGKT AF P++ I VE G
Sbjct: 165 NIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRG 224
Query: 69 -----PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
P +I++PTREL QIH + KKF+ G++ V YGG+ + QQ+ EL+RG +I+V
Sbjct: 225 SRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILV 284
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI----RPDRQT 179
TPGR+ D+L + +++ + +L +DEADRM DMGFEPQI +IV+ + R RQT
Sbjct: 285 ATPGRLNDLLERAR---VSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQT 341
Query: 180 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXX----XX 235
+LFSATFP Q++ LA ++ + + VG ITQ VE
Sbjct: 342 MLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQ 401
Query: 236 XXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 295
+ L+FV+++ D L L + +P S+HG + Q +RE + FK+ +
Sbjct: 402 RETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPI 461
Query: 296 LIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAP 355
L+AT +AARGLD+ + V+NFD+PN +DYVHR+GRTGRAG+ G A F +E +A+ A
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 521
Query: 356 DLAKALELSEQVVPDDLKALA 376
LA+ ++ + Q VP+ L A
Sbjct: 522 SLAELMQEANQEVPEWLTRYA 542
>AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR
1); ATP binding / ATP-dependent helicase/ helicase/
nucleic acid binding | chr1:11479921-11482707 FORWARD
Length = 537
Score = 270 bits (689), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 226/375 (60%), Gaps = 13/375 (3%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPVE 64
+LD K ++KP PIQ+ P ++ GRD IGIAKTGSGKTLAF +P + H+ K +
Sbjct: 127 VLDCCK--TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIG 184
Query: 65 AGD---GPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEI 121
G P L+++PTREL QI +++ + G++ + VYGGS QIS ++ G +I
Sbjct: 185 GGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDI 244
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 181
V+ TPGR+ D++ ++ + L V+++V+DEADRM DMGFE + I+ N RQ V+
Sbjct: 245 VIGTPGRLRDLIESN---VLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVM 301
Query: 182 FSATFPRQVEILARKVLN-KPVEIQVGGRSVV-NKDITQLVEVXXXXXXXXX--XXXXXX 237
FSAT+P V LA++ ++ P+++ +G + N D+ Q++EV
Sbjct: 302 FSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKY 361
Query: 238 XXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 297
K ++L+F + + + L R L + G+ +S+HG K Q++R ++S FK C LL+
Sbjct: 362 HKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLV 421
Query: 298 ATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDL 357
AT +AARGLD+ ++E+VIN+ P EDYVHR+GRTGRAG+KG A TF + + A +L
Sbjct: 422 ATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGEL 481
Query: 358 AKALELSEQVVPDDL 372
L + QVVP DL
Sbjct: 482 VNVLREAGQVVPADL 496
>AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr4:16069669-16071405 REVERSE
Length = 542
Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/436 (36%), Positives = 237/436 (54%), Gaps = 24/436 (5%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQP-- 61
S +L +K P PIQ Q LP+V+SGRD IGIA TGSGKTL FVLPM+ +
Sbjct: 106 SPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIM 165
Query: 62 -PVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVL------GIRCVPVYGGSGVAQQISE 114
P+ AG+GPI L++ P+REL +Q + +++F L +R + GG + Q+
Sbjct: 166 MPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDV 225
Query: 115 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 174
+K+G IVV TPGR+ DIL K +L L +DEADR+ D+GFE I + + +
Sbjct: 226 VKKGVHIVVATPGRLKDILAK---KKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFK 282
Query: 175 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXX 234
RQT+LFSAT P +++I A L KPV + VG N D+ Q EV
Sbjct: 283 SQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQ--EVEYVKQEAKIVYL 340
Query: 235 XXXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 294
+LIF +++ D + LL G +++HG KDQ DR+ IS FK+ +
Sbjct: 341 LECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKD 400
Query: 295 LLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYA 354
+L+AT +A++GLD +++ VIN+D+P E+YVHR+GRTGR G+ G A TFI++ +
Sbjct: 401 VLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEIT 460
Query: 355 -PDLAKALELSEQVVPDDLKALADGFMAKVNQGLEQAHGT-------GYGGSGFKFNEEE 406
DL L+ ++Q +P L L +G M + + + A G G G + + E
Sbjct: 461 LLDLKHLLQEAKQRIPPVLAEL-NGPMEE-TETIANASGVKGCAYCGGLGHRILQCPKFE 518
Query: 407 DEKRIAAKKAQAKEYG 422
+K +A ++ +G
Sbjct: 519 HQKSVAISSSRKDHFG 534
>AT1G28180.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr1:9843084-9845002
REVERSE
Length = 614
Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/377 (37%), Positives = 202/377 (53%), Gaps = 29/377 (7%)
Query: 18 PMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA---GDGPIGLIM 74
PM + +P+ + RD IGI+ TGSGKT AFVLPML +I PP+ +GP L+M
Sbjct: 225 PMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVM 284
Query: 75 APTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 134
PTREL QI + KF++ LG + V + G + +Q +L +G EIV+ TPGR++D L
Sbjct: 285 VPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCL- 343
Query: 135 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP------------------D 176
+ L + YLV+DEADRM DM FEPQ++ ++ ++ P
Sbjct: 344 --ERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVL-DVMPCSNLKPEKEDEELEEKKIY 400
Query: 177 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXX 236
R T +FSAT VE LARK L PV + +G K ITQ V +
Sbjct: 401 RTTYMFSATMLLSVERLARKFLRNPVVVTIGE---TTKFITQQVIMTKESDKFSRLKKLI 457
Query: 237 XXXXXKGKILIFVQSQDKCDALFRDLLKHGY-PCLSLHGAKDQTDRESTISDFKSNVCNL 295
++FV +++K D + ++L K G +LH K Q R+ ++ +FK N+
Sbjct: 458 DDLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNV 517
Query: 296 LIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAP 355
L+ T + RGLD+ +L VIN+D+PN + Y HR+GRTGRAG+ G A TF++ ED
Sbjct: 518 LVTTDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFY 577
Query: 356 DLAKALELSEQVVPDDL 372
L + L +VP +L
Sbjct: 578 GLKQKLNECNSLVPPEL 594
>AT3G22330.1 | Symbols: PMH2 | PMH2 (putative mitochondrial RNA
helicase 2); ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:7892641-7895145
FORWARD
Length = 616
Score = 228 bits (582), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 201/351 (57%), Gaps = 9/351 (2%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPML-RHIKDQPPV 63
+I+ + +K PIQ L M GRD IG A+TG+GKTLAF +P++ + IK
Sbjct: 114 EIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKH 173
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
G P+ L++APTREL +Q+ + ++ A L C+ YGG+ + QQ+ +L G ++ V
Sbjct: 174 GRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRQLDYGVDVAV 231
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
TPGR+ID++ NL V ++V+DEAD+M +GF + I++ + RQ+++FS
Sbjct: 232 GTPGRVIDLMKRGA---LNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 288
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLVEVXXXXXXXXXXXXXXXXXXX 241
AT P + L +K LN P+ + + G S + IT +
Sbjct: 289 ATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAK 348
Query: 242 KGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSI 301
GK ++F Q++ D L L + + C +LHG Q+ RE T++ F+ N+L+AT +
Sbjct: 349 GGKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 407
Query: 302 AARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAR 352
AARGLDV ++L+I++++PN+ E +VHR GRTGRAG+KG AI S++ +R
Sbjct: 408 AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR 458
>AT3G22310.1 | Symbols: PMH1, ATRH9 | PMH1 (PUTATIVE MITOCHONDRIAL
RNA HELICASE 1); ATP-dependent helicase/ DNA binding /
RNA binding | chr3:7887382-7889806 FORWARD
Length = 610
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 197/351 (56%), Gaps = 9/351 (2%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPML-RHIKDQPPV 63
+I+ +K +K PIQ L M GRD IG A+TG+GKTLAF +P++ + IK
Sbjct: 126 EIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKH 185
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
G P L++APTREL +Q+ + ++ A L C+ YGG+ + QQ+ EL G ++ V
Sbjct: 186 GRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRELNYGIDVAV 243
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
TPGR+ID++ NL V ++V+DEAD+M +GF + I+Q + RQ+++FS
Sbjct: 244 GTPGRIIDLMKRGA---LNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFS 300
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLVEVXXXXXXXXXXXXXXXXXXX 241
AT P + L +K LN P+ I + G S + IT
Sbjct: 301 ATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGK 360
Query: 242 KGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSI 301
GK ++F Q++ D L L K Y C +LHG Q RE T++ F+ ++L+AT +
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 302 AARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAR 352
AARGLDV ++LVI++++PN+ E +VHR GRTGRAG+KG AI ++ R
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTR 470
>AT1G77030.1 | Symbols: | ATP binding / ATP-dependent helicase/ RNA
binding / helicase/ hydrolase, acting on acid
anhydrides, in phosphorus-containing anhydrides /
nucleic acid binding | chr1:28947492-28951526 REVERSE
Length = 891
Score = 222 bits (566), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 216/399 (54%), Gaps = 19/399 (4%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+ + IKK Y P PIQ + +P+++SG D + +A+TGSGKT AF++PML +K P
Sbjct: 39 VFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVP--- 95
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
G LI++PTR+L +Q K+ K +R + GG + Q EL +G ++++ T
Sbjct: 96 QGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIAT 155
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR++ +L LR V Y+V DEAD +F MGF Q+ +I+ + +RQT+LFSAT
Sbjct: 156 PGRLMHLLSEVDD--MTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSAT 213
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDIT-QLVEVXXXXXXXXXXXXXXXXXXXKGK 244
P + A+ L +P +++ + ++ D+ + V +
Sbjct: 214 LPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQ 273
Query: 245 ILIFVQSQDKCD---ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSI 301
LIFV ++ + +LF+ L++ P + +G DQ R+ +S F++ LLI T I
Sbjct: 274 TLIFVSTKHHVEFVNSLFK--LENIEPSVC-YGDMDQDARKIHVSRFRARKTMLLIVTDI 330
Query: 302 AARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKAL 361
AARG+D+ L+ VIN+D P + +VHRVGR RAGR GCA +F++ ED Y DL L
Sbjct: 331 AARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDL--HL 388
Query: 362 ELSEQVVP----DDLKALADGFMAKVNQGLEQAHGTGYG 396
LS+ V P D++ + M K +Q ++ T YG
Sbjct: 389 FLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSG-VTVYG 426
>AT5G26742.2 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 748
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 216/396 (54%), Gaps = 26/396 (6%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++ ++++K PIQ L + GRD I AKTG+GKTLAF +P+++ + + E
Sbjct: 112 RLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE----E 167
Query: 65 AGDG---------PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISEL 115
AGD P L++APTREL +Q+ +IK+ A L CV YGG Q S L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCV--YGGVSYTIQQSAL 225
Query: 116 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 175
RG ++VV TPGR+ID++ G+ L V YLV+DEAD+M +GFE + I++N+
Sbjct: 226 TRGVDVVVGTPGRIIDLI---EGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPT 282
Query: 176 DRQTVLFSATFPRQVEILARKVLNKPVEIQ-VGGRSVVNKDITQLVEVXXXXXXXXXXXX 234
RQ++LFSAT P V+ LARK L+ P+ I VG + + +L +
Sbjct: 283 KRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILS 342
Query: 235 XXXXXXXKG-KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 293
KG K ++F Q++ D + L + +LHG Q RE T++ F+
Sbjct: 343 DLITVYAKGGKTIVFTQTKRDADEVSL-ALSNSIATEALHGDISQHQRERTLNAFRQGKF 401
Query: 294 NLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARY 353
+L+AT +A+RGLD+ ++LVI++++PN E +VHR GRTGRAG++G AI + R
Sbjct: 402 TVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRT 461
Query: 354 APDLAKALE-----LSEQVVPDDLKALADGFMAKVN 384
L + + +S V D L++ AD +A +N
Sbjct: 462 VRSLERDVGCHFEFISPPTVGDLLESSADQVVATLN 497
>AT5G26742.1 | Symbols: emb1138 | emb1138 (embryo defective 1138);
ATP binding / ATP-dependent helicase/ RNA binding /
helicase/ nucleic acid binding / zinc ion binding |
chr5:9285540-9288871 REVERSE
Length = 747
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 216/396 (54%), Gaps = 26/396 (6%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++ ++++K PIQ L + GRD I AKTG+GKTLAF +P+++ + + E
Sbjct: 112 RLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE----E 167
Query: 65 AGDG---------PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISEL 115
AGD P L++APTREL +Q+ +IK+ A L CV YGG Q S L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCV--YGGVSYTIQQSAL 225
Query: 116 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 175
RG ++VV TPGR+ID++ G+ L V YLV+DEAD+M +GFE + I++N+
Sbjct: 226 TRGVDVVVGTPGRIIDLI---EGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPT 282
Query: 176 DRQTVLFSATFPRQVEILARKVLNKPVEIQ-VGGRSVVNKDITQLVEVXXXXXXXXXXXX 234
RQ++LFSAT P V+ LARK L+ P+ I VG + + +L +
Sbjct: 283 KRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILS 342
Query: 235 XXXXXXXKG-KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 293
KG K ++F Q++ D + L + +LHG Q RE T++ F+
Sbjct: 343 DLITVYAKGGKTIVFTQTKRDADEVSL-ALSNSIATEALHGDISQHQRERTLNAFRQGKF 401
Query: 294 NLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARY 353
+L+AT +A+RGLD+ ++LVI++++PN E +VHR GRTGRAG++G AI + R
Sbjct: 402 TVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRT 461
Query: 354 APDLAKALE-----LSEQVVPDDLKALADGFMAKVN 384
L + + +S V D L++ AD +A +N
Sbjct: 462 VRSLERDVGCHFEFISPPTVGDLLESSADQVVATLN 497
>AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:5568482-5570487 REVERSE
Length = 491
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 196/377 (51%), Gaps = 13/377 (3%)
Query: 7 LDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAG 66
++T K+L KP P+Q +P +++GRD +G+A+TGSGKT AF LP+L + + P
Sbjct: 70 VETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPY---- 125
Query: 67 DGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTP 126
G L++ PTREL Q+ K L +RC + GG + Q L IV+ TP
Sbjct: 126 -GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTP 184
Query: 127 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 186
GR+ +L + R +LV+DEADR+ D+GF+ ++ I Q + RQT+LFSAT
Sbjct: 185 GRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATM 244
Query: 187 PRQVEILARKVLNKPV--EIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG- 243
++ L NK E G ++V +TQ KG
Sbjct: 245 TSNLQALLEHSSNKAYFYEAYEGLKTV--DTLTQQFIFEDKDAKELYLVHILSQMEDKGI 302
Query: 244 -KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
+IFV + C L L + +++H Q+ R S +S FKS +L+AT +A
Sbjct: 303 RSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVA 362
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALE 362
+RGLD+ ++LVIN+D+P DYVHRVGRT RAGR G A++ I+E D + + + E
Sbjct: 363 SRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE--E 420
Query: 363 LSEQVVPDDLKALADGF 379
+ +++ P + K + D
Sbjct: 421 VGKKMEPYNKKVITDSL 437
>AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28) |
chr4:9362176-9366449 REVERSE
Length = 789
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 195/369 (52%), Gaps = 8/369 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L + L Y KP PIQA +P+ ++GRD A TGSGKT AF LP L + +P +
Sbjct: 178 LLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP--KR 235
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
LI+ PTREL QIHS I+ A+ I+C + GG V +Q L+ +IVV T
Sbjct: 236 VFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVAT 295
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGRMID L S +L + L++DEADR+ GF +IT +V+ RQT+LFSAT
Sbjct: 296 PGRMIDHLRNSMS--VDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSAT 353
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDIT-QLVEVXXXXXXXXXXXXXXX-XXXXKG 243
+V+ L + LNKP+ + + +T ++V + K
Sbjct: 354 MTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTFKS 413
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
K++IF ++ L G LHG Q R ++ F+ + LIAT +AA
Sbjct: 414 KVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAA 473
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKAL-- 361
RGLD+ ++ VIN+ P + YVHRVGRT RAGR+G A+TF+++ D +AK +
Sbjct: 474 RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGS 533
Query: 362 ELSEQVVPD 370
+L +V+P+
Sbjct: 534 KLKSRVIPE 542
>AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10) |
chr5:24546601-24549148 REVERSE
Length = 456
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 195/365 (53%), Gaps = 12/365 (3%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLP----MLRHIKDQ 60
+++ ++L + P IQA+ALP + G+D IG+A+TGSGKT AF +P +L ++ D
Sbjct: 19 ELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDS 78
Query: 61 PPVEAGDGP----IGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELK 116
P + G P +++PTREL QI + + +RC + GG QQ L
Sbjct: 79 EP-KKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALG 137
Query: 117 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 176
+ ++V TPGR+ D + + G +L+ + YLV+DEADR+ + FE + +I++ I +
Sbjct: 138 KRPHVIVATPGRLWDHMSDTKG--FSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLE 195
Query: 177 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXX 236
R+T LFSAT ++V L R L PV+I+ + + Q
Sbjct: 196 RKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRF-VAAKYKDCYLVYI 254
Query: 237 XXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 296
+ +IF ++ D L L G+ + + G Q+ R ++ FK+ CN+L
Sbjct: 255 LSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNIL 314
Query: 297 IATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPD 356
+ T +A+RGLD+ +++VIN+D+P + +DY+HRVGRT RAGR G I+ +++ + +
Sbjct: 315 VCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQ 374
Query: 357 LAKAL 361
+ K +
Sbjct: 375 IEKLI 379
>AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2980483-2983268 REVERSE
Length = 541
Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 198/375 (52%), Gaps = 18/375 (4%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
IL + +L + +P PIQ QA+PI++SGR+C A TGSGKT AF+ PML IK + P +
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML--IKLKRP--S 207
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAK--VLGIRCV--PVYGGSGVAQQISELKRGTEI 121
DG +I++P REL Q + KK K IR + P+ + + K ++
Sbjct: 208 TDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFS------KLWCDV 261
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTV 180
++ TP R+ + K +L +V YLV+DE+D++F+ QI +V+ P
Sbjct: 262 LISTPMRLKRAI---KAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRS 318
Query: 181 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXX 240
LFSAT P VE LAR +++ V + +G ++ ++ + Q +
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAES 378
Query: 241 XKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 300
+LIFVQS+++ L+ +L +H +RE+ + F++ +LIAT
Sbjct: 379 LNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATD 438
Query: 301 IAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKA 360
+ ARG+D K + VIN+D P+ Y+HR+GR+GRAGR G AITF +E+D + ++A
Sbjct: 439 VIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANT 498
Query: 361 LELSEQVVPDDLKAL 375
+ S VP + +L
Sbjct: 499 MMSSGCEVPSWIMSL 513
>AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 12/347 (3%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPV 63
++L I + +++P PIQ +++PI ++GRD + AK G+GKT AF +P+L I +D +
Sbjct: 141 ELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVI 200
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
+A +I+ PTREL Q K+ K L I+ + GG+ + I L + ++V
Sbjct: 201 QA------VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLV 254
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
TPGR++D+ T G + L+ + LVMDEAD++ F+P + ++ + RQ ++FS
Sbjct: 255 GTPGRILDL--TKKG-VCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFS 311
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
ATFP V+ + L P I + + K ITQ
Sbjct: 312 ATFPVTVKDFKDRFLTNPYVINLMDELTL-KGITQFYAFVEERQKIHCLNTLFSKLQINQ 370
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
I IF S ++ + L + + + GY C +H Q R DF++ C L+ T +
Sbjct: 371 SI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 429
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEED 350
RG+D++ + +VINFD P + E Y+HRVGR+GR G G A+ I+ ED
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYED 476
>AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 12/347 (3%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPV 63
++L I + +++P PIQ +++PI ++GRD + AK G+GKT AF +P+L I +D +
Sbjct: 141 ELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVI 200
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
+A +I+ PTREL Q K+ K L I+ + GG+ + I L + ++V
Sbjct: 201 QA------VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLV 254
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
TPGR++D+ T G + L+ + LVMDEAD++ F+P + ++ + RQ ++FS
Sbjct: 255 GTPGRILDL--TKKG-VCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFS 311
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
ATFP V+ + L P I + + K ITQ
Sbjct: 312 ATFPVTVKDFKDRFLTNPYVINLMDELTL-KGITQFYAFVEERQKIHCLNTLFSKLQINQ 370
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
I IF S ++ + L + + + GY C +H Q R DF++ C L+ T +
Sbjct: 371 SI-IFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 429
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEED 350
RG+D++ + +VINFD P + E Y+HRVGR+GR G G A+ I+ ED
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYED 476
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594128 REVERSE
Length = 412
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 189/370 (51%), Gaps = 8/370 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L I ++KP IQ + + G D I A++G+GKT F +L+ + D ++
Sbjct: 50 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-DFSLIQC 108
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
L++APTREL QQI ++ LG++ GG+ V + L+ G +VV T
Sbjct: 109 Q----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGT 164
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR+ D+L + N++ V+DEAD M GF+ QI I Q + P Q +FSAT
Sbjct: 165 PGRVFDMLKRQSLRADNIK---MFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKI 245
P + + RK ++KPV I V + + I Q +
Sbjct: 222 MPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 281
Query: 246 LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
+IFV ++ K D L + + + HG DQ R+ + +F+S +LI T + ARG
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELSE 365
+DV+++ LVINFD+P E+Y+HR+GR+GR GRKG AI F++ +D R D+ K +
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV 401
Query: 366 QVVPDDLKAL 375
+ +P ++ L
Sbjct: 402 EELPSNVADL 411
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592635-4594094 REVERSE
Length = 402
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 189/370 (51%), Gaps = 8/370 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L I ++KP IQ + + G D I A++G+GKT F +L+ + D ++
Sbjct: 40 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-DFSLIQC 98
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
L++APTREL QQI ++ LG++ GG+ V + L+ G +VV T
Sbjct: 99 Q----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGT 154
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR+ D+L + N++ V+DEAD M GF+ QI I Q + P Q +FSAT
Sbjct: 155 PGRVFDMLKRQSLRADNIK---MFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 211
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKI 245
P + + RK ++KPV I V + + I Q +
Sbjct: 212 MPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 271
Query: 246 LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
+IFV ++ K D L + + + HG DQ R+ + +F+S +LI T + ARG
Sbjct: 272 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 331
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELSE 365
+DV+++ LVINFD+P E+Y+HR+GR+GR GRKG AI F++ +D R D+ K +
Sbjct: 332 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV 391
Query: 366 QVVPDDLKAL 375
+ +P ++ L
Sbjct: 392 EELPSNVADL 401
>AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 196/381 (51%), Gaps = 9/381 (2%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI---KDQP 61
K+L ++ YD P PIQ QA+P ++G+ + A TGSGKT +F++P++ +
Sbjct: 120 KLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEH 179
Query: 62 PVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEI 121
P + P+ +++APTREL Q+ K K L + V GG ++ Q+ +++G E+
Sbjct: 180 PSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVEL 239
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 181
++ TPGR++D+L ++ N + V+DE D M GF Q+ +I Q + Q +L
Sbjct: 240 IIGTPGRVVDLLSKHTIELDN---IMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLL 295
Query: 182 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVXXXXXXXXXXXXXXXXXX 240
FSAT R+VE + + + + + +G + NK + QL + V
Sbjct: 296 FSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNH 355
Query: 241 XKGKILIFVQSQDKCDALFRDL-LKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 299
K +++V S+ D L + + G LS+HG K +R + F +L++T
Sbjct: 356 FKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVST 415
Query: 300 SIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAK 359
+ RG+D+ + VI FD+P+ ++Y+H +GR R G KG AI F++E+D PDL
Sbjct: 416 GVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVA 475
Query: 360 ALELSEQVVPDDLKALADGFM 380
AL+ S +P +L L M
Sbjct: 476 ALKSSGAAIPKELINLTSREM 496
>AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359136-360734 FORWARD
Length = 505
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 196/381 (51%), Gaps = 9/381 (2%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI---KDQP 61
K+L ++ YD P PIQ QA+P ++G+ + A TGSGKT +F++P++ +
Sbjct: 120 KLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEH 179
Query: 62 PVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEI 121
P + P+ +++APTREL Q+ K K L + V GG ++ Q+ +++G E+
Sbjct: 180 PSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVEL 239
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 181
++ TPGR++D+L ++ N + V+DE D M GF Q+ +I Q + Q +L
Sbjct: 240 IIGTPGRVVDLLSKHTIELDN---IMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLL 295
Query: 182 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVXXXXXXXXXXXXXXXXXX 240
FSAT R+VE + + + + + +G + NK + QL + V
Sbjct: 296 FSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNH 355
Query: 241 XKGKILIFVQSQDKCDALFRDL-LKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 299
K +++V S+ D L + + G LS+HG K +R + F +L++T
Sbjct: 356 FKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVST 415
Query: 300 SIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAK 359
+ RG+D+ + VI FD+P+ ++Y+H +GR R G KG AI F++E+D PDL
Sbjct: 416 GVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVA 475
Query: 360 ALELSEQVVPDDLKALADGFM 380
AL+ S +P +L L M
Sbjct: 476 ALKSSGAAIPKELINLTSREM 496
>AT1G72730.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:27378040-27379593
REVERSE
Length = 414
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 189/372 (50%), Gaps = 12/372 (3%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L I ++KP IQ + + G D I A++G+GKT F +L+ + D V+
Sbjct: 52 LLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-DISLVQC 110
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
L++APTREL QQI ++ LG++ GG+ V + L+ G +VV T
Sbjct: 111 Q----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGT 166
Query: 126 PGRMIDILCTSGGKITNLRR--VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
PGR+ D+L + +LR + V+DEAD M GF+ QI I Q + Q +FS
Sbjct: 167 PGRVFDLL-----RRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFS 221
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
AT P + + RK +NKPV I V + + I Q
Sbjct: 222 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 281
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
+ +IFV ++ K D L + + + HG DQ R+ + +F+S +LI T + A
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 341
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALEL 363
RG+DV+++ LVINFD+P E+Y+HR+GR+GR GRKG AI F++ ED R D+ + +
Sbjct: 342 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNV 401
Query: 364 SEQVVPDDLKAL 375
+ +P ++ L
Sbjct: 402 VVEELPSNVADL 413
>AT3G19760.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative | chr3:6863790-6866242 FORWARD
Length = 408
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 8/354 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L + + ++KP IQ +A+ ++ GRD I A++G+GKT L + + + D E
Sbjct: 46 VLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ-VVDTSSREV 104
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
LI++PTREL Q I+ I+ GG+ V + I +L+ G +V T
Sbjct: 105 Q----ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGT 160
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR+ D++ + R + L++DE+D M GF+ QI + + + PD Q L SAT
Sbjct: 161 PGRVCDMI---KRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSAT 217
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKI 245
P ++ + K + +PV+I V + + I Q +
Sbjct: 218 LPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQA 277
Query: 246 LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
+IF ++ K D L + H + S+HG Q +R++ +++F+S +LI T + ARG
Sbjct: 278 VIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARG 337
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAK 359
+DV+++ LVIN+D+PN+ E Y+HR+GR+GR GRKG AI F+ +D + D+ +
Sbjct: 338 IDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQ 391
>AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:18859836-18862318 FORWARD
Length = 528
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 175/345 (50%), Gaps = 10/345 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L I + ++KP PIQ +++PI ++G D + AK G+GKT AF +P L I + V
Sbjct: 165 LLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ 224
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
+I+ PTREL Q K+ +K L I + GG+ + I L + ++V T
Sbjct: 225 A-----VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGT 279
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR++D+ + + L+ LVMDEAD++ + F+P I ++Q + RQ ++FSAT
Sbjct: 280 PGRILDL---AKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSAT 336
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKI 245
FP V+ + L KP I + + + +TQ I
Sbjct: 337 FPVTVKSFKDRYLKKPYIINLMDQLTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQSI 395
Query: 246 LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
IF S ++ + L + + + GY C +H Q R DF++ C L+ T + RG
Sbjct: 396 -IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRG 454
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEED 350
+D++ + +VINFD P E Y+HRVGR+GR G G A+ ++ ED
Sbjct: 455 IDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYED 499
>AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 177/345 (51%), Gaps = 10/345 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L I + ++KP PIQ +++PI ++G D + AK G+GKT AF +P+L I V
Sbjct: 135 LLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ 194
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
+I+ PTREL Q K+ +K L I+ + GG+ + I L + ++V T
Sbjct: 195 -----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGT 249
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR++D+ T G + L+ LVMDEAD++ F+P + ++Q + +RQ ++FSAT
Sbjct: 250 PGRILDL--TKKG-VCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSAT 306
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKI 245
FP V+ + L KP I + + + +TQ I
Sbjct: 307 FPVTVKAFKDRHLRKPYVINLMDQLTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQSI 365
Query: 246 LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
IF S ++ + L + + + GY C +H Q R +F++ C L+ T + RG
Sbjct: 366 -IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG 424
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEED 350
+D++ + +VINFD P E Y+HRVGR+GR G G A+ ++ ED
Sbjct: 425 IDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYED 469
>AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22666590-22669154 FORWARD
Length = 498
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 177/345 (51%), Gaps = 10/345 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L I + ++KP PIQ +++PI ++G D + AK G+GKT AF +P+L I V
Sbjct: 135 LLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ 194
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
+I+ PTREL Q K+ +K L I+ + GG+ + I L + ++V T
Sbjct: 195 -----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGT 249
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR++D+ T G + L+ LVMDEAD++ F+P + ++Q + +RQ ++FSAT
Sbjct: 250 PGRILDL--TKKG-VCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSAT 306
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKI 245
FP V+ + L KP I + + + +TQ I
Sbjct: 307 FPVTVKAFKDRHLRKPYVINLMDQLTL-MGVTQYYAFVEERQKVHCLNTLFSKLQINQSI 365
Query: 246 LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
IF S ++ + L + + + GY C +H Q R +F++ C L+ T + RG
Sbjct: 366 -IFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG 424
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEED 350
+D++ + +VINFD P E Y+HRVGR+GR G G A+ ++ ED
Sbjct: 425 IDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYED 469
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC
TRANSLATION INITIATION FACTOR 4A1); ATP-dependent
helicase/ translation initiation factor |
chr3:4592586-4594128 REVERSE
Length = 415
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 8/347 (2%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEA 65
+L I ++KP IQ + + G D I A++G+GKT F +L+ + D ++
Sbjct: 50 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-DFSLIQC 108
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
L++APTREL QQI ++ LG++ GG+ V + L+ G +VV T
Sbjct: 109 Q----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGT 164
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR+ D+L + N++ V+DEAD M GF+ QI I Q + P Q +FSAT
Sbjct: 165 PGRVFDMLKRQSLRADNIK---MFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221
Query: 186 FPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKI 245
P + + RK ++KPV I V + + I Q +
Sbjct: 222 MPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQS 281
Query: 246 LIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
+IFV ++ K D L + + + HG DQ R+ + +F+S +LI T + ARG
Sbjct: 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAR 352
+DV+++ LVINFD+P E+Y+HR+GR+GR GRKG AI F++ +D R
Sbjct: 342 IDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388
>AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:26358328-26361244 FORWARD
Length = 633
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 188/359 (52%), Gaps = 14/359 (3%)
Query: 9 TIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLP---MLRHIKDQPPVEA 65
+IK++ + + IQA+A+P +M G D +G A+TGSGKTLAF++P +L +K P
Sbjct: 168 SIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTP---- 223
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 125
+G L++ PTREL Q + K+ K V GG + L +G ++V T
Sbjct: 224 RNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVAT 283
Query: 126 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 185
PGR++D L + G I + + +LVMDEADR+ + FE + +I+ + RQT LFSAT
Sbjct: 284 PGRLLDHLENTNGFI--FKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSAT 341
Query: 186 FPRQVEILARKVLNKPVEIQV--GGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
+VE LAR L PV I V G + V N+ + Q V K
Sbjct: 342 QSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKK 401
Query: 244 KILIFVQSQDKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
KI++F S K +L ++ + CL + G DQ R T F +L+ T++A
Sbjct: 402 KIMVFF-STCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVA 460
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRA-GRKGCAITFISEEDARYAPDLAKA 360
ARGLD ++ ++ +D P++ DY+HRVGRT R G KG A+ ++ ++ ++ L A
Sbjct: 461 ARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLKAA 519
>AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2; ATP-dependent helicase/
translation initiation factor | chr1:20260495-20262018
FORWARD
Length = 412
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 189/373 (50%), Gaps = 12/373 (3%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
+L I ++KP IQ + + G D I A++G+GKT F +L+ + D ++
Sbjct: 49 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQL-DYALLQ 107
Query: 65 AGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVC 124
L++APTREL QQI ++ G++ GG+ V + L+ G +VV
Sbjct: 108 CQ----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVG 163
Query: 125 TPGRMIDILCTSGGKITNLRR--VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 182
TPGR+ D+L + +LR + V+DEAD M GF+ QI I Q + P Q +F
Sbjct: 164 TPGRVFDML-----RRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218
Query: 183 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXK 242
SAT P + + RK ++KPV I V + + I Q
Sbjct: 219 SATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAI 278
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
+ +IFV ++ K D L + + + HG DQ R+ + +F+S +LI T +
Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALE 362
ARG+DV+++ LVINFD+P E+Y+HR+GR+GR GRKG AI F++ +D R D+ K
Sbjct: 339 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYN 398
Query: 363 LSEQVVPDDLKAL 375
+ + +P ++ L
Sbjct: 399 VVVEELPSNVADL 411
>AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359628-360734 FORWARD
Length = 368
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 9/354 (2%)
Query: 24 QALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI---KDQPPVEAGDGPIGLIMAPTREL 80
QA+P ++G+ + A TGSGKT +F++P++ + P + P+ +++APTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 81 VQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 140
Q+ K K L + V GG ++ Q+ +++G E+++ TPGR++D+L ++
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 141 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK 200
N + V+DE D M GF Q+ +I Q + Q +LFSAT R+VE + + +
Sbjct: 122 DN---IMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGSLAKE 177
Query: 201 PVEIQVGGRSVVNKDITQL-VEVXXXXXXXXXXXXXXXXXXXKGKILIFVQSQDKCDALF 259
+ + +G + NK + QL + V K +++V S+ D L
Sbjct: 178 IILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLA 237
Query: 260 RDL-LKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFD 318
+ + G LS+HG K +R + F +L++T + RG+D+ + VI FD
Sbjct: 238 NAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFD 297
Query: 319 VPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELSEQVVPDDL 372
+P+ ++Y+H +GR R G KG AI F++E+D PDL AL+ S +P +L
Sbjct: 298 MPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKEL 351
>AT5G62190.1 | Symbols: PRH75 | PRH75; ATP-dependent helicase/
DEAD/H-box RNA helicase binding | chr5:24980542-24983879
REVERSE
Length = 671
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 174/337 (51%), Gaps = 17/337 (5%)
Query: 19 MPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPP-----VEAGDGPIGLI 73
PIQA +V+ G D +G A+TG GKTLAFVLP+L + + P + G P L+
Sbjct: 120 FPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLV 179
Query: 74 MAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 133
+ PTREL +Q+ +D + LG+ +YGG Q +LKRG +IVV TPGR+ D +
Sbjct: 180 LLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHI 239
Query: 134 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR--QTVLFSATFPRQVE 191
+ L+ + V+DEAD M MGF + I+ + QT+LFSAT P V+
Sbjct: 240 ERQNLDFSYLQ---FRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVK 296
Query: 192 ILARKVL---NKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKILIF 248
++ + L K +++ + + + + G+ +IF
Sbjct: 297 NISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIF 356
Query: 249 VQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDV 308
+++ + L LL +LHG Q+ RE T++ F++ L+AT++AARGLD+
Sbjct: 357 AETKVQVSEL-SGLLDGSR---ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDI 412
Query: 309 KELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITF 345
+++L+I + P E Y+HR GRTGRAG G A+T
Sbjct: 413 NDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449
>AT1G51380.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:19047960-19049967
FORWARD
Length = 392
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 179/369 (48%), Gaps = 10/369 (2%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIK-DQPPV 63
K+L + Y KP IQ +AL ++ GRD I A++G+GKT + + + + V
Sbjct: 32 KVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKV 91
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVV 123
+ L+++P+REL Q I+ I+ GG + + I +L+RG V
Sbjct: 92 QV------LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVS 145
Query: 124 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 183
TPGR+ D++ + V LV+DE+D M G + QI + + + D Q L S
Sbjct: 146 GTPGRVYDMIKRGS---LQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLIS 202
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG 243
AT P+++ + K + PV I V + + I Q
Sbjct: 203 ATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTIN 262
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
+ +IF ++ K D L + + S+HG K Q +R+ ++ F+S +LIA+ + A
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWA 322
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALEL 363
RG+DV+ + VIN+D+PN+ E Y+HR+GR GR GR+G AI F+ D + D+ +
Sbjct: 323 RGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGT 382
Query: 364 SEQVVPDDL 372
+ +P DL
Sbjct: 383 KIREMPADL 391
>AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26897235-26899381 REVERSE
Length = 558
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 179/359 (49%), Gaps = 16/359 (4%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLP---MLRHIKDQPP 62
I++ + + ++ P+QA+ +P + S +D + A TGSGKTLAF+LP ++R PP
Sbjct: 27 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
Query: 63 VEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVL-GIRCVPVYGGSGVAQQISELKR-GTE 120
+G+I++PTREL QIH + F L + V + GG V ++ L+ G
Sbjct: 87 --KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGAN 144
Query: 121 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 180
+++ TPGR+ D++ + + R + L++DEADR+ DMGF+ Q+ I+ + R+T
Sbjct: 145 LLIGTPGRLSDMM--KRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 181 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXX 240
LFSAT + V LA+ L +E+ G S E
Sbjct: 203 LFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIE 262
Query: 241 XKGKILIFVQSQDKCDALFRDLLKHGYPCL------SLHGAKDQTDRESTISDFKSNVCN 294
K K L+ C + L+ P L S HG DQ R++ ++ F
Sbjct: 263 NKNKKLVVFFMTCAC-VDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSG 321
Query: 295 LLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARY 353
+L+ T +AARGLD+ ++ V+ +D P + ++HRVGRT R R+G AI F+ ++ Y
Sbjct: 322 VLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDY 380
>AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:6399724-6403007 REVERSE
Length = 568
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 206/412 (50%), Gaps = 24/412 (5%)
Query: 10 IKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPVEAGDG 68
IK++ + IQA ++ ++ G+D +G A+TGSGKTLAF++P + + K++ G G
Sbjct: 104 IKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG 163
Query: 69 PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 128
I ++ PTREL Q + ++ K V GG+ + + G+ +V+ TPGR
Sbjct: 164 VI--VICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGR 221
Query: 129 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 188
++D L + I + + LV+DEADR+ + FE + +I++ + RQT LFSAT
Sbjct: 222 LLDHLQNTKAFI--YKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTS 279
Query: 189 QVEILARKVLNKPVEIQV--GGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKIL 246
+V+ LAR L PV + V G R V N+ + Q V K KI+
Sbjct: 280 KVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNK-KIM 338
Query: 247 IFVQSQDKCDALFRDLLKHGYPCLS-LHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
+F S K +++K +S +HG DQ R T DF +L+ T +AARG
Sbjct: 339 VFF-STCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARG 397
Query: 306 LDVKELELVINFDVPNHYEDYVHRVGRTGRA-GRKGCAITFISEEDARYAPDL------A 358
LD+ ++ +I +D P+ +Y+HRVGRT R G KG A+ + E+ ++ L
Sbjct: 398 LDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPV 457
Query: 359 KALELSEQVVPDDLKAL-----ADGFMAKVNQGLEQAHGTGYGGSGFK--FN 403
K LE +E+ + + AL D + K+ + +A+ + Y K FN
Sbjct: 458 KELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLKDIFN 509
>AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18) |
chr5:1612077-1615195 FORWARD
Length = 593
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 185/368 (50%), Gaps = 25/368 (6%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPM---LRHIKDQPP 62
I++ + + +++ P+QA +P++ S +D A TGSGKTLAFV+P+ LR PP
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP 86
Query: 63 VEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLG-IRCVPVYGGSGVAQQISELKR-GTE 120
+G+I++PTREL QI++ + F L + V + GG V + ++ G
Sbjct: 87 --KPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCN 144
Query: 121 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 180
+++ TPGR+ DI+ +I + R + L++DEADR+ +MGF+ Q+ I+ + R+T
Sbjct: 145 VLIGTPGRLSDIM--ERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTG 202
Query: 181 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXX 240
LFSAT VE LA+ L PV ++V +S ++ QL
Sbjct: 203 LFSATQTEGVEELAKAGLRNPVRVEVRAKS-KSESSQQLTNSKTPSGLHLEYMECEADKK 261
Query: 241 XKGKILIFVQSQDK--------CDAL-FRDLLKHGYPCLS------LHGAKDQTDRESTI 285
+ + +++ DK C ++ + L+ P L +HG Q R+ +
Sbjct: 262 SSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKAL 321
Query: 286 SDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITF 345
+ F L+ T +AARGLD+ ++ V+ +D P + HR GRT R GR+G AI F
Sbjct: 322 ASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVF 381
Query: 346 ISEEDARY 353
+ ++ Y
Sbjct: 382 LLPKEEAY 389
>AT5G11170.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr5:3553334-3556646
FORWARD
Length = 427
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 18/375 (4%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L I ++ P +Q + +P + G D I AK+G GKT FVL L+ I+ P
Sbjct: 56 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP--- 112
Query: 65 AGDGPI-GLIMAPTRELVQQIHSDIKKFAKVLGIRCVPV-YGGSGVAQQISELKRGT-EI 121
G + L++ TREL QI ++ +F+ L V V YGG + LK I
Sbjct: 113 ---GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHI 169
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTV 180
VV TPGR +L + K +L+ V + ++DE D+M + + + I + D+Q +
Sbjct: 170 VVGTPGR---VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 181 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE--VXXXXXXXXXXXXXXXX 238
+FSAT +++ + +K + P+EI V + + + LV+ +
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT--LHGLVQHYIKLSEMEKNRKLNDLLD 284
Query: 239 XXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 298
+++IFV+S + L + L++ +P + +H Q +R + FK +L+A
Sbjct: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVA 344
Query: 299 TSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFI-SEEDARYAPDL 357
T + RG+D++ + +VIN+D+P+ + Y+HRVGR GR G KG AITF+ S D+ +
Sbjct: 345 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQV 404
Query: 358 AKALELSEQVVPDDL 372
+ E+ + +P+ +
Sbjct: 405 QERFEVDIKELPEQI 419
>AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 427
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 18/375 (4%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L I ++ P +Q + +P + G D I AK+G GKT FVL L+ I+ P
Sbjct: 56 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP--- 112
Query: 65 AGDGPI-GLIMAPTRELVQQIHSDIKKFAKVLGIRCVPV-YGGSGVAQQISELKRGT-EI 121
G + L++ TREL QI ++ +F+ L V V YGG + LK I
Sbjct: 113 ---GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHI 169
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTV 180
VV TPGR +L + K +L+ V + ++DE D+M + + + I + D+Q +
Sbjct: 170 VVGTPGR---VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 181 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE--VXXXXXXXXXXXXXXXX 238
+FSAT +++ + +K + P+EI V + + + LV+ +
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT--LHGLVQHYIKLSEMEKNRKLNDLLD 284
Query: 239 XXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 298
+++IFV+S + L + L++ +P + +H Q +R + FK +L+A
Sbjct: 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVA 344
Query: 299 TSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFI-SEEDARYAPDL 357
T + RG+D++ + +VIN+D+P+ + Y+HRVGR GR G KG AITF+ S D+ +
Sbjct: 345 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQV 404
Query: 358 AKALELSEQVVPDDL 372
+ E+ + +P+ +
Sbjct: 405 QERFEVDIKELPEQI 419
>AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative |
chr5:25472598-25475196 REVERSE
Length = 522
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 192/377 (50%), Gaps = 18/377 (4%)
Query: 7 LDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAG 66
L IK Y+ +Q LPI++ G+D + AKTG+GKT+AF+LP + + PP
Sbjct: 66 LKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPD 125
Query: 67 DG--PI-GLIMAPTRELVQQIHSD---IKKFAKVLGIRCVPVYGGSGVAQQISELKRG-T 119
+ PI L++ PTREL Q ++ + K+ +G++ V GG+ + + ++
Sbjct: 126 NKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVV--IGGTRLGLEQKRMQTNPC 183
Query: 120 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 179
+I+V TPGR+ D + + G T L+ V LV+DEAD + DMGF I RI+ + +RQT
Sbjct: 184 QILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQT 243
Query: 180 VLFSATFP---RQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXX 236
LFSAT P RQ+ ++A + ++ V G ++ + Q+ +
Sbjct: 244 FLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLL 303
Query: 237 XXXXXKG---KILIFVQSQDKCDALFRDLL-KHGYPCLSLHGAKDQTDRESTISDFKSNV 292
K+++F + L DLL + +H K Q+ R ++F+ +
Sbjct: 304 REHIMGNVDYKVIVFCTTA-MVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSK 362
Query: 293 CNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAR 352
+L+ + ++ARG+D ++ LV+ +P E Y+HR+GRTGR G++G I ++ +
Sbjct: 363 GLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEEY 422
Query: 353 YAPDLAKALELSEQVVP 369
+ L K L +++ +P
Sbjct: 423 FLSSL-KDLPITKSPLP 438
>AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) |
chr5:2790341-2794059 FORWARD
Length = 850
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 179/356 (50%), Gaps = 19/356 (5%)
Query: 7 LDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV--E 64
L IK ++ +Q LPI++ G+D + AKTG+GKT+AF+LP + + PP +
Sbjct: 394 LKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRD 453
Query: 65 AGDGPI-GLIMAPTRELVQQIHSD---IKKFAKVLGIRCVPVYGGSGVAQQISELKRG-T 119
+ PI L++ PTREL Q ++ + K+ +G++ V GG+ + + ++
Sbjct: 454 SRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVV--IGGTKLPTEQRRMQTNPC 511
Query: 120 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 179
+I+V TPGR+ D + + G T L V LV+DEAD + DMGF I RI+ + RQT
Sbjct: 512 QILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQT 571
Query: 180 VLFSATFPRQVEILARKVLNKPVE----IQVGGRSVVNKDITQLVEVXXXXXXXXXXXXX 235
LFSAT P +V + L + E +Q G ++ +TQ+ +
Sbjct: 572 FLFSATVPEEVRQICHVALKRDHEFINCVQEGS-GETHQKVTQMYMIASLDRHFSLLHVL 630
Query: 236 XXXXXXKG---KILIFVQSQDKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN 291
K++IF + L DLL +H K Q+ R +F+ +
Sbjct: 631 LKEHIADNVDYKVIIFCTTA-MVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKS 689
Query: 292 VCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFIS 347
+L+ + ++ARG+D ++ LV+ +P+ E Y+HR+GRTGR G++G + ++
Sbjct: 690 KAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLA 745
>AT5G08620.1 | Symbols: STRS2, ATRH25 | STRS2 (STRESS RESPONSE
SUPPRESSOR 2); ATP-dependent helicase/ RNA binding |
chr5:2794540-2797548 FORWARD
Length = 563
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 194/388 (50%), Gaps = 22/388 (5%)
Query: 21 IQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDGP---IGLIMAPT 77
+Q LP+++ G+D + AKTG+GKT+AF+LP + + PP + I L++ PT
Sbjct: 106 VQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPT 165
Query: 78 RELVQQIHSD---IKKFAKVLGIRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDIL 133
REL Q ++ + K+ +G++ V GG+ + + L++ +I+V TPGR+ D +
Sbjct: 166 RELACQAAAEANILLKYHPSIGVQVV--IGGTKLPTEQRRLQKSPCQILVATPGRLKDHI 223
Query: 134 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP---RQV 190
+ G T L V LV+DEAD + DMGF +I RI+ + RQT LFSAT RQ+
Sbjct: 224 DNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
Query: 191 EILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG---KILI 247
+A K ++ V G ++ ++Q+ + K++I
Sbjct: 284 CHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGYKVII 343
Query: 248 FVQSQDKCDALFRDLL-KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGL 306
F + L DLL K +H K Q+ R +F+ + +L+ + ++ARG+
Sbjct: 344 FCTTA-MVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGV 402
Query: 307 DVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELSEQ 366
D ++ LV+ +P+ E Y+HR+GRTGR G++G + ++ + + + K L +++
Sbjct: 403 DYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSV-KDLPITKS 461
Query: 367 VVPDDLKALADGFMAKVNQGLEQAHGTG 394
+P + + KV +GL Q T
Sbjct: 462 SLP----PIDHEAVKKVQKGLIQVEMTN 485
>AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:22298668-22301719 REVERSE
Length = 739
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 171/356 (48%), Gaps = 10/356 (2%)
Query: 10 IKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPVEAGDG 68
+K Y +Q+ A+P + GRD +G A+TGSGKTLAFV+P+L + +++ E G G
Sbjct: 86 LKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVG 145
Query: 69 PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 128
I I++PTREL Q + K K + GG E I+VC PGR
Sbjct: 146 CI--IISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGR 203
Query: 129 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 188
++ + + ++ L++DEADR+ D F+ Q+ I+ + RQT+LFSAT +
Sbjct: 204 LLQHMDETPN--FECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTK 261
Query: 189 QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXX-XXXXXXXXXXXXXXXXKGKILI 247
+V+ LAR L P I V +V + + V +IL+
Sbjct: 262 KVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILV 321
Query: 248 FVQSQDKCDALFR--DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARG 305
F+ ++ + + + L+ G P SLHG Q R S F ++L T + ARG
Sbjct: 322 FLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIER-QSVLFCTDVLARG 380
Query: 306 LDV-KELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKA 360
LD K ++ V+ D P Y+HRVGRT R +G ++ F++ + + L +A
Sbjct: 381 LDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMIEKLQEA 436
>AT3G16840.1 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr3:5738020-5743042
REVERSE
Length = 826
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 196/450 (43%), Gaps = 75/450 (16%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIV-MSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQ---- 60
++ +I +L++ +P IQ + G+D IG A+TGSGKTLAF LP+L+ + D+
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 61 ----------PPVEAGDGPI-GLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVA 109
A DG + LI+ PTREL Q+ ++ AK L ++ VP+ GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSE 320
Query: 110 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 169
+Q LK EIVV TPGR+ +++ + L +++ V+DEADRM + G ++ I
Sbjct: 321 KQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSI 380
Query: 170 V--------------QNIRPD----------RQTVLFSATFPRQVEILARKVLNKPV--- 202
+ Q ++ + RQT +FSAT + RK L +
Sbjct: 381 LDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDF--RKKLKRGSSKS 438
Query: 203 ---------EIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXK----------- 242
I+V +D ++++ K
Sbjct: 439 KQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILS 498
Query: 243 ----GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 298
G+ ++F S + L G +L Q R +I F+++ +LIA
Sbjct: 499 VHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIA 558
Query: 299 TSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLA 358
T + ARG+D+K + +I++ +P+ E YVHR GRT RA GC+I I + L
Sbjct: 559 TDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLC 618
Query: 359 KALEL-SEQVVPDDLKALADGFMAKVNQGL 387
K+ + S ++ P L + +M V + L
Sbjct: 619 KSFSMESVKIFP-----LDNSYMPAVRKRL 643
>AT5G11170.2 | Symbols: | ATP binding / ATP-dependent helicase/
helicase/ nucleic acid binding | chr5:3554272-3556646
FORWARD
Length = 344
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 175/346 (50%), Gaps = 18/346 (5%)
Query: 34 DCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDGPI-GLIMAPTRELVQQIHSDIKKFA 92
D I AK+G GKT FVL L+ I+ P G + L++ TREL QI ++ +F+
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRFS 55
Query: 93 KVLGIRCVPV-YGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLV 150
L V V YGG + LK IVV TPGR +L + K +L+ V + +
Sbjct: 56 TYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGR---VLALAREKDLSLKNVRHFI 112
Query: 151 MDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 209
+DE D+M + + + I + D+Q ++FSAT +++ + +K + P+EI V
Sbjct: 113 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 172
Query: 210 SVVNKDITQLVE--VXXXXXXXXXXXXXXXXXXXKGKILIFVQSQDKCDALFRDLLKHGY 267
+ + + LV+ + +++IFV+S + L + L++ +
Sbjct: 173 AKLT--LHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF 230
Query: 268 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYV 327
P + +H Q +R + FK +L+AT + RG+D++ + +VIN+D+P+ + Y+
Sbjct: 231 PSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 290
Query: 328 HRVGRTGRAGRKGCAITFI-SEEDARYAPDLAKALELSEQVVPDDL 372
HRVGR GR G KG AITF+ S D+ + + E+ + +P+ +
Sbjct: 291 HRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQI 336
>AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:6136333-6139510 FORWARD
Length = 621
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/385 (28%), Positives = 188/385 (48%), Gaps = 32/385 (8%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
+++ +++LN + P IQ +P VM + + + TGSGKTLA++LP+++ +++ E
Sbjct: 122 EVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMRED---E 178
Query: 65 AGDG-------PIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKR 117
A G P +++ PTREL +Q++ K + R + V GGS + Q L
Sbjct: 179 ANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNN 238
Query: 118 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ--NIRP 175
++VV TPGR++ + G + + YLV+DEAD MFD GF P+I + + N R
Sbjct: 239 AIDMVVGTPGRILQHI-EEGNMVYG--DIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRA 295
Query: 176 DR------QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ----LVEVXXX 225
+ QTVL +AT V+ L + ++ S ++K I +++
Sbjct: 296 LKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRT---STLHKKIANARHDFIKLSGG 352
Query: 226 XXXXXXXXXXXXXXXXKG-KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDREST 284
KG K+++F + + A+ L ++ ++ HG R
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 285 ISDFKSNV--CNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCA 342
+ FK C L+ T +AARGLD+ +++ V+ FD P + DY+HR GRT R G KG
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKV 471
Query: 343 ITFISEEDARYAPDLAKALELSEQV 367
+ +S +D A + +A+ +E +
Sbjct: 472 TSLVSRKDQMLAARIEEAMRNNESL 496
>AT3G53110.1 | Symbols: LOS4 | LOS4 (LOW EXPRESSION OF OSMOTICALLY
RESPONSIVE GENES 4); ATP-dependent helicase/ RNA
helicase/ RNA-dependent ATPase | chr3:19687968-19690423
FORWARD
Length = 496
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 162/351 (46%), Gaps = 24/351 (6%)
Query: 12 KLNYDKPMPIQAQALPIVMS--GRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDGP 69
++ ++KP IQA +LP++M+ + I A GSGKT FVL ML + P + P
Sbjct: 109 EMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRV--DPTLRE---P 163
Query: 70 IGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGS--GVAQQISELKRGTEIVVCTPG 127
L + PTREL Q ++K K GI S G +V+ TPG
Sbjct: 164 QALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPG 223
Query: 128 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNI---RPDRQTVLFS 183
+ + K L + LV DEAD M GF +I+++I P+ Q +LFS
Sbjct: 224 TLKKWMAF---KRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFS 280
Query: 184 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVXXXXXXXXXXXXXXXXXXXK 242
ATF V+ + + P ++ V + + Q V
Sbjct: 281 ATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDI 340
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
G+ +IFV+++ + + L + GY S+HG ++DR+ + +FK + +LIAT +
Sbjct: 341 GQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVI 400
Query: 303 ARGLDVKELELVINFDVPNHYED-------YVHRVGRTGRAGRKGCAITFI 346
ARG D + + LV+N+++P YE Y+HRVGR GR GRKG +
Sbjct: 401 ARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLL 451
>AT1G12770.1 | Symbols: EMB1586 | EMB1586 (embryo defective 1586);
ATP binding / ATP-dependent helicase/ helicase/ nucleic
acid binding | chr1:4351888-4353543 FORWARD
Length = 551
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 183/421 (43%), Gaps = 76/421 (18%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHI-----KDQ 60
+LD++++ + P +Q+ A+P ++ G D + + TGSGKTLA++LP+L I K +
Sbjct: 121 LLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSR 180
Query: 61 PPVEAGDGPI---GLIMAPTRELVQQIHSDIKKFAKVLGIRCV-PVYGGSGVAQQISELK 116
D +I+AP+REL QI +++K + R V + GG+ +Q LK
Sbjct: 181 SSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALK 240
Query: 117 RGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-- 173
+ IVV TPGR+ +I + GGK+ + +LV+DE D + F I RI++++
Sbjct: 241 KNKPAIVVGTPGRIAEI--SKGGKL-HTHGCRFLVLDEVDELLSFNFREDIHRILEHVGK 297
Query: 174 ------------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE 221
R +RQT+L SAT P V A+ ++PV +Q V D Q
Sbjct: 298 RSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQ--ANKVTPLDTVQ--- 352
Query: 222 VXXXXXXXXXXXXXXXXXXXKGKILIFVQS--------------QDKCDALFR------- 260
G+I +QS Q K D L R
Sbjct: 353 -----PSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDA 407
Query: 261 ------------------DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
L G +HG + R + + FK+ +L+ ++
Sbjct: 408 QSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELS 467
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALE 362
ARGLDV E +LV+N ++P Y HR GRTGR GRKG +T E + K L
Sbjct: 468 ARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLG 527
Query: 363 L 363
L
Sbjct: 528 L 528
>AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:23463284-23466451 REVERSE
Length = 798
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 185/387 (47%), Gaps = 20/387 (5%)
Query: 21 IQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDG-----PI-GLIM 74
+Q L + G+D + AKTG+GK++AF+LP + + + +G G PI LI+
Sbjct: 354 VQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV--LKAMNSGKGVNKVAPIFALIL 411
Query: 75 APTRELVQQIHSDIKKFAKVL-GIRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDI 132
PTREL QI ++ K K GI + GG+ L+ +I++ TPGR++D
Sbjct: 412 CPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDH 471
Query: 133 LCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEI 192
+ G + L + ++DEAD + D+GF + +I+ + RQ++LFSAT P++V
Sbjct: 472 IENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRR 531
Query: 193 LARKVLNKPVEI--QVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG----KIL 246
+++ VL + +G V D + + KI+
Sbjct: 532 VSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKII 591
Query: 247 IFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGL 306
+F + ++ L + +H K Q R +FK + +L+ + ++ARG+
Sbjct: 592 VFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGM 651
Query: 307 DVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELSEQ 366
+ ++ LVI +P+ E Y+HR+GRTGR G+ G + I+ + RY D K L L
Sbjct: 652 NYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIAPWE-RYFLDELKDLPLEPI 710
Query: 367 VVPD---DLKALADGFMAKVNQGLEQA 390
PD +K D MAK++ +++A
Sbjct: 711 PAPDLDSIVKHQVDQSMAKIDTSIKEA 737
>AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:3576483-3580396 FORWARD
Length = 845
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 188/394 (47%), Gaps = 20/394 (5%)
Query: 21 IQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDG-----PIG-LIM 74
+Q L + G+D + AKTG+GK++AF+LP + + + +G G PI LI+
Sbjct: 401 VQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETV--LKAMNSGKGVHKVAPIFVLIL 458
Query: 75 APTRELVQQIHSDIKKFAKVL-GIRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDI 132
PTREL QI ++ K K GI + GG+ L+ +I++ TPGR++D
Sbjct: 459 CPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDH 518
Query: 133 LCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEI 192
+ G + L + ++DEAD + D+GF+ + +I+ + RQ++LFSAT P++V
Sbjct: 519 IENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRR 578
Query: 193 LARKVLNKPVEI--QVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXKG----KIL 246
+++ VL + +G V D + + KI+
Sbjct: 579 VSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKII 638
Query: 247 IFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGL 306
+F + ++ L + +H K Q R +FK + +L+ + ++ARG+
Sbjct: 639 VFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGM 698
Query: 307 DVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALELSEQ 366
+ ++ LVI +P+ E Y+HR+GRTGR G+ G + I+ + RY D K L L
Sbjct: 699 NYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWE-RYFLDELKDLPLEPI 757
Query: 367 VVPD---DLKALADGFMAKVNQGLEQAHGTGYGG 397
PD +K D MAK++ +++A + G
Sbjct: 758 PAPDLDSRVKHQVDQSMAKIDTSIKEAAYHAWLG 791
>AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16) |
chr4:16631661-16634834 FORWARD
Length = 626
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 169/379 (44%), Gaps = 49/379 (12%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV 63
S+++ + K +KP IQ A+P ++ G+D + AKTGSGKTLA++LP+L+ + V
Sbjct: 55 SRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSV 114
Query: 64 EAGD-GPIGLIMAPTRELVQQIHSDIKKFAKV--LGIRCVPVYGGSGVAQQISELKRGTE 120
P I+ P+REL QQ+++++ ++ + ++ V + + + L E
Sbjct: 115 SKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPE 174
Query: 121 IVVCTPGRMIDILCTSGGKITNL---RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 177
I+V TP + C + G + ++ LV+DEAD + G+E + R V +I P R
Sbjct: 175 ILVSTPACIPK--CFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNL-RSVTSIIPRR 231
Query: 178 -QTVLFSATFPRQVEILARKVLNKPVEIQV----GGRSVVNKDITQLVEVXXXXXXXXXX 232
Q +L SAT VE L + +L+ P+ + + V ++ Q
Sbjct: 232 CQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHI 291
Query: 233 XXXXXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 292
+ KILIF+ + D L L K G L+G Q R + F + +
Sbjct: 292 LALLKLEVVQKKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGL 351
Query: 293 CNLLIATSIAA-----------------------------------RGLDVKELELVINF 317
+ LIAT + RG+D K++ VINF
Sbjct: 352 FDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINF 411
Query: 318 DVPNHYEDYVHRVGRTGRA 336
D+P Y+HR+GRTGRA
Sbjct: 412 DMPQSVTGYIHRIGRTGRA 430
>AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26870262-26872152 REVERSE
Length = 465
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 40/312 (12%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLP---MLRHIKDQPP 62
I++ + + ++ P+QA+ +P + S +D + A TGSGKTLAF+LP ++R PP
Sbjct: 28 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
Query: 63 VEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTEIV 122
+G+I++PTREL QIH + + ++ +C V ++ G ++
Sbjct: 88 --KPHQVMGVIISPTRELSAQIHK-VARAVRLDFAKCREVEADMNTLEE-----EGANLL 139
Query: 123 VCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 182
+ TPGR+ D++ + + R + L++DEADR+ DMGF+ Q+ I+ + R+T LF
Sbjct: 140 IGTPGRLSDMM--KRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLF 197
Query: 183 SATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVXXXXXXXXXXXXXXXXXXXK 242
SAT + V LA+ L P + ++ +QLV +
Sbjct: 198 SATQTQAVADLAKAGLRNPY-----LKCEADQKSSQLVHL--------------LIENKN 238
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLS------LHGAKDQTDRESTISDFKSNVCNLL 296
K+++F + D + L+ P L HG DQ R++ ++ F +L
Sbjct: 239 KKLVVFFMTCACVD--YWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVL 296
Query: 297 IATSIAARGLDV 308
+ T +AARGLD+
Sbjct: 297 LCTDVAARGLDI 308
>AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17) |
chr2:16976783-16979392 FORWARD
Length = 609
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 25/222 (11%)
Query: 4 SKILDTIK-KLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPP 62
+K+ D +K ++ ++ P +QAQA+P+++SGRD + A TG+GKT+A++ P++ H++ P
Sbjct: 38 TKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSP 97
Query: 63 -VEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVY--GGSGVAQQISELKRGT 119
V+ G L++ PTREL Q++ ++K VP Y GG A++ + L++G
Sbjct: 98 KVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHW-IVPGYVMGGEKKAKEKARLRKGI 156
Query: 120 EIVVCTPGRMIDILCTSGGKI-TNLRRVTYLVMDEADRMFDMGFEPQITRIVQ------- 171
I++ TPGR++D L + + NLR +++ DEAD + ++G+ +I +I++
Sbjct: 157 SILIATPGRLLDHLKNTASFVHKNLR---WVIFDEADSILELGYGKEIEQIIKLLGSGQN 213
Query: 172 ------NIRP---DRQTVLFSATFPRQVEILARKVLNKPVEI 204
+I P +Q +L SAT +V LA+ L+ PV I
Sbjct: 214 EQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMI 255
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 244 KILIFVQSQDKCDALFRDLLKHGYP------------------CLSLHGAKDQTDRESTI 285
K+++F ++D D + L + +P LHG+ +Q DR S
Sbjct: 333 KVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAF 392
Query: 286 SDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITF 345
FK+ +L++T +AARGLD ++ +I +D P +YVHRVGRT R G KG A+ F
Sbjct: 393 GTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLF 452
Query: 346 ISEEDARYAPDLAK 359
+ + Y +L K
Sbjct: 453 LQPIEIDYLKELKK 466
>AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2201531-2204662 FORWARD
Length = 781
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 175/370 (47%), Gaps = 34/370 (9%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKD---QPP 62
++ +K+ N+D+P IQA A V+ G+ CI ++GSGKTLA+++P+++ +++ Q
Sbjct: 385 MMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGH 444
Query: 63 VEAGDG-PIGLIMAPTRELVQQIHSDIKKFAKV-LGIRCVPVYGGSGVAQQISELKRGTE 120
++ G P +++ PT EL Q+ ++ + +K + R + V GG Q+ L++G +
Sbjct: 445 SKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVD 504
Query: 121 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQT 179
+++ TPGR ++ ++NLR ++DE D +F D FE + ++ + Q
Sbjct: 505 VLIATPGRFTYLMNEGILGLSNLR---CAILDEVDILFGDDEFEAALQNLINSSPVTAQY 561
Query: 180 VLFSATFPRQVEILARKVLNKP-VEIQVGGR--SVVNKDITQLVEVXXXXXXXXXXXXXX 236
+ +AT P +EI + V P E+ +G R V N LV+
Sbjct: 562 LFVTATLP--LEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAF 619
Query: 237 XXXXXK----------GKILIFVQSQDKC---DALFR--DLLKHGYPCLSLHGAKDQTDR 281
K +IF + C + +F+ D + L H A Q R
Sbjct: 620 QNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESR 679
Query: 282 ESTISDFKSNVCN----LLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAG 337
+ + +F S+ L+ T A+RG+D ++ V+ FD P +YV RVGRT R
Sbjct: 680 LTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGA 739
Query: 338 R-KGCAITFI 346
R KG A F+
Sbjct: 740 RGKGKAFIFV 749
>AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:6461444-6463687 FORWARD
Length = 472
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/396 (26%), Positives = 175/396 (44%), Gaps = 53/396 (13%)
Query: 6 ILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQ-PPVE 64
IL ++++ + P IQ +ALP + +GRDCI A+TGSGKTL ++L + I Q V+
Sbjct: 87 ILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQ 146
Query: 65 AGDGPIGLIMAPTRELVQQIHSDIKKFA-----KVLGIRCVPVYGGSGVAQQISELK-RG 118
A +I+ PTREL Q+ + A V G + + G + + S LK
Sbjct: 147 A------VIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEP 200
Query: 119 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP-QITRIVQNIRP-- 175
I+V T + +L +I ++R LV+DE D +F + + +++ +
Sbjct: 201 PAILVATVASLCHMLEKHIFRIDSVR---VLVVDEVDFLFYSSKQVGSVRKLLTSFSSCD 257
Query: 176 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE---------VXXXX 226
RQTV SA+ P+ + ++ ++ + R VV+ ++ ++ V
Sbjct: 258 KRQTVFASASIPQH-----KHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEK 312
Query: 227 XXXXXXXXXXXXXXXKGKILIFVQSQ---------DKCDALFRDLLKHGYP----CLSLH 273
+IFV Q D L + LK Y L L
Sbjct: 313 TNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLE 372
Query: 274 GAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRT 333
G + R +++++ + LL++T IAARG+D+ E + NFD+P DY+HR GR
Sbjct: 373 GDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRA 432
Query: 334 GR---AGRKGCAITFISEED----ARYAPDLAKALE 362
GR + RK I+ E+ RY +L + E
Sbjct: 433 GRKPFSDRKCIVANLITSEERFVLQRYENELMFSCE 468
>AT4G15850.1 | Symbols: ATRH1 | ATRH1; ATP-dependent helicase/
DEAD/H-box RNA helicase binding | chr4:9001426-9004534
FORWARD
Length = 522
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 185/456 (40%), Gaps = 87/456 (19%)
Query: 33 RDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGDGPIGLIMAPTRELVQQIHSDIKKFA 92
RD + TGSGKTL++ LP+++ + +P V L++ PTR+L Q+ A
Sbjct: 73 RDICVNSPTGSGKTLSYALPIVQLLASRP-VRCLRA---LVVLPTRDLALQVKDVFDAIA 128
Query: 93 KVLGIRCVPVYGGSGVAQQISEL---------------------KRGTEIVVCTPGRMID 131
+G+ G S +A +IS+L + +I+V TPGR++D
Sbjct: 129 PAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMD 188
Query: 132 -ILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ-------NIRPD------- 176
I T G + +LR YLV+DE DR+ ++ + ++Q ++ P
Sbjct: 189 HINNTKGFTLEHLR---YLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPS 245
Query: 177 ---------RQTV---------------LFSATFPRQVEILARKVLNKPVEIQVGGRSVV 212
RQ+V + SAT + L + L+ P+ + GG
Sbjct: 246 AFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYR 305
Query: 213 NKDITQLVEVXXXXXXXXXXXXXXXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCL-- 270
+ + + + K +IF S + L + L G P +
Sbjct: 306 LPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKA 365
Query: 271 -SLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHR 329
G +Q+ R + F+ +L+A+ RG+DVK + VIN+D+P + ++HR
Sbjct: 366 KEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHR 425
Query: 330 VGRTGRAGRKGCAITFISEEDA-RYAPDLAKALELSEQVVP------DDLKALADGFMAK 382
GRT RAG+ G T +S + R++ L K S + P D ++A + K
Sbjct: 426 AGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALEK 485
Query: 383 VNQGLEQA----------HGTGYGGSGFKFNEEEDE 408
+ + +E H + G S K N+ E
Sbjct: 486 LKELVESEAPKKGRQAFRHNSRTGNSQTKLNKPRSE 521
>AT5G11200.3 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 468
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
+++IFV+S + L + L++ +P + +H Q +R + FK +L+AT +
Sbjct: 330 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 389
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFI-SEEDARYAPDLAKAL 361
RG+D++ + +VIN+D+P+ + Y+HRVGR GR G KG AITF+ S D+ + +
Sbjct: 390 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERF 449
Query: 362 ELSEQVVPDDL 372
E+ + +P+ +
Sbjct: 450 EVDIKELPEQI 460
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 13/198 (6%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L I ++ P +Q + +P + G D I AK+G GKT FVL L+ I+ P
Sbjct: 56 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP--- 112
Query: 65 AGDGPI-GLIMAPTRELVQQIHSDIKKFAKVLGIRCVPV-YGGSGVAQQISELKRGT-EI 121
G + L++ TREL QI ++ +F+ L V V YGG + LK I
Sbjct: 113 ---GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHI 169
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTV 180
VV TPGR +L + K +L+ V + ++DE D+M + + + I + D+Q +
Sbjct: 170 VVGTPGR---VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 181 LFSATFPRQVEILARKVL 198
+FSAT +++ + +K +
Sbjct: 227 MFSATLSKEIRPVCKKFM 244
>AT5G11200.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567389-3570686 FORWARD
Length = 486
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
+++IFV+S + L + L++ +P + +H Q +R + FK +L+AT +
Sbjct: 348 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLV 407
Query: 303 ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFI-SEEDARYAPDLAKAL 361
RG+D++ + +VIN+D+P+ + Y+HRVGR GR G KG AITF+ S D+ + +
Sbjct: 408 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERF 467
Query: 362 ELSEQVVPDDL 372
E+ + +P+ +
Sbjct: 468 EVDIKELPEQI 478
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 13/203 (6%)
Query: 5 KILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVE 64
++L I ++ P +Q + +P + G D I AK+G GKT FVL L+ I+ P
Sbjct: 56 ELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP--- 112
Query: 65 AGDGPI-GLIMAPTRELVQQIHSDIKKFAKVLGIRCVPV-YGGSGVAQQISELKRGT-EI 121
G + L++ TREL QI ++ +F+ L V V YGG + LK I
Sbjct: 113 ---GQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHI 169
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTV 180
VV TPGR +L + K +L+ V + ++DE D+M + + + I + D+Q +
Sbjct: 170 VVGTPGR---VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 181 LFSATFPRQVEILARKVLNKPVE 203
+FSAT +++ + +K + +E
Sbjct: 227 MFSATLSKEIRPVCKKFMQDFLE 249
>AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22) |
chr1:22090369-22092885 REVERSE
Length = 581
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 15 YDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIK----DQPPVEAGDGP- 69
+D+P QA +P ++SG+D I A+TGSGKT ++ P++ + D + P
Sbjct: 100 FDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPF 159
Query: 70 ----IGLIMAPTRELVQQIHSDIKKFAKVLG---IRCVPVYGGSGVAQQISELKRGTEIV 122
I LI+ P L +Q+ + G +R V G G ++ +I+
Sbjct: 160 PLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDRLP------DII 213
Query: 123 VCTPGRMI-DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 181
V TP ++ +I ++ LR V Y+V DEAD + F+ QI R++ +R D
Sbjct: 214 VSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE---- 269
Query: 182 FSATFPRQVEILARKVLNKPVEI 204
+QV LA+ L +P+EI
Sbjct: 270 ------KQVSRLAKSNLGRPMEI 286
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 244 KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAA 303
+ ++F + + +A+ L K C H +R + ++DF+ + + T AA
Sbjct: 426 RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAA 484
Query: 304 RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLAKALEL 363
RG+DV + VI D + D++HR+GRT RAG+ G + +E + + +A+++
Sbjct: 485 RGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIREAVKM 544
Query: 364 SEQV 367
+ V
Sbjct: 545 GQPV 548
>AT2G28600.1 | Symbols: | ATP binding / ATP-dependent helicase/
nucleic acid binding | chr2:12251845-12254672 FORWARD
Length = 502
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 133/323 (41%), Gaps = 33/323 (10%)
Query: 66 GDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKR-GTEIVVC 124
G+ P L + P++ Q+ S + K K +GI V ++ G+ + QIS LK E +V
Sbjct: 194 GNSPFLLYLVPSQSKASQVRS-VCKALKGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVA 252
Query: 125 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 184
TP R+++I+ G I+N V+ LV+DE + G+ + I Q I QT++F+
Sbjct: 253 TPERLLEIVTLKGVDISN---VSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNN 309
Query: 185 TFPRQVEILARKVLNKPVEIQVGGRSVVNKD--ITQLVEVXXXXXXXXXXXXXXXXXXXK 242
+F + + L V SV ++ ITQ V V
Sbjct: 310 SFSASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEKKLQKFAKHLDSSSS 369
Query: 243 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 302
I I + + F+ ++ L L G T +S +S+ K +
Sbjct: 370 KLIYIVTKEES-----FKKIM----AILKLKGISVSTSSDSKLSEVKK-------SRKPV 413
Query: 303 ARGLDVKELELVINFD-----VPNHY---EDYVHRVGRTGRAGRKGCAITFISEEDA--R 352
A +D ++L+ + D +P+ + E Y + R G ++I+E+DA
Sbjct: 414 AHLIDFEQLDTTVMRDSETVLLPDFFPSIEIYTQILTSMARESAHGVLHSYITEKDAASY 473
Query: 353 YAPDLAKALELSEQVVPDDLKAL 375
A L LE Q VPD + +
Sbjct: 474 QAGPLVNVLENCGQNVPDRWRNM 496
>AT5G19210.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:6462100-6463687 FORWARD
Length = 315
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 252 QDKCDALFRDLLKHGYP----CLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLD 307
D L + LK Y L L G + R +++++ + LL++T IAARG+D
Sbjct: 190 NDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGID 249
Query: 308 VKELELVINFDVPNHYEDYVHRVGRTGR---AGRKGCAITFISEED----ARYAPDLAKA 360
+ E + NFD+P DY+HR GR GR + RK I+ E+ RY +L +
Sbjct: 250 LPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERFVLQRYENELMFS 309
Query: 361 LE 362
E
Sbjct: 310 CE 311
>AT1G27880.1 | Symbols: | ATP-dependent DNA helicase, putative |
chr1:9708940-9713901 FORWARD
Length = 911
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 144/358 (40%), Gaps = 56/358 (15%)
Query: 4 SKILDTIKKLNYDKPMPIQAQALPIVMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPV 63
+K+L+ + YD Q QA+ +++ G + + TG+GK+L + +P + +
Sbjct: 258 TKLLNLV--YGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAM--------I 307
Query: 64 EAGDGPIGLIMAPTRELVQQIHSDIKKFAKVL-GIRCVPVYGGSGVAQQISELKRGT-EI 121
G I L+++P LV + +K ++ G + + +LK G ++
Sbjct: 308 LPG---ITLVVSP---LVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRKLKEGIIKV 361
Query: 122 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM--FDMGFEPQITRIVQNI------ 173
+ +P R++++ S +++ V+ +V+DEA + + F P R+ ++
Sbjct: 362 LFVSPERLLNVEFLSMFRMS--LSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELK 419
Query: 174 ------------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLV 220
Q V+ S P ++ + L E+ V KD+ L+
Sbjct: 420 AECILAMTATATTMTLQAVMSSLEIP-STNLIQKSQLRDNFELSVSLSGANRMKDLLILM 478
Query: 221 EVXXXXXXXXXXXXXXXXXXXKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTD 280
E I+++ + Q + D + + L + H D
Sbjct: 479 ESPPYKEIR--------------SIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKD 524
Query: 281 RESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGR 338
R F SN +++AT GLD ++ VI+F VP E+YV +GR GR GR
Sbjct: 525 RVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGR 582