Jatropha Genome Database

JcCB0075081.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075081.30 - phase: 0 /partial
         (119 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05250.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   116   4e-27

>AT3G05250.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:1495635-1497387 FORWARD
          Length = 278

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 83/124 (66%), Gaps = 8/124 (6%)

Query: 1   EENVDIIIHHILGVVDSFLKRSNQLHEMMTSE---TKQEEFKTLVCDAARPFLAARTDRF 57
           EE+VDI++HH++GV++SF KR  Q  +  T     T QE+FK +V +AARPF+ ARTDRF
Sbjct: 155 EEDVDIVLHHLVGVMESFCKRIKQRRKQETRSAETTNQEQFKAVVSEAARPFVMARTDRF 214

Query: 58  VNELELFLASGFNIEAYDDVYIQQLGWNTPGATGESADVEP-----SVAIPAVPYLYIFD 112
           V+ELELFLA+G N+EAYD +Y Q L  N     G +++        +V     PYL+IF+
Sbjct: 215 VDELELFLAAGLNLEAYDAIYKQGLEGNNRREIGAASEEREEVEEHNVRTRVTPYLFIFE 274

Query: 113 DDSD 116
           +DSD
Sbjct: 275 EDSD 278