Jatropha Genome Database

JcCB0074501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0074501.10 + phase: 2 /partial
         (270 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24320.1 | Symbols:  | WD-40 repeat family protein | chr5:828...   182   2e-46
AT5G24320.2 | Symbols:  | WD-40 repeat family protein | chr5:828...   178   3e-45
AT5G53500.1 | Symbols:  | WD-40 repeat family protein | chr5:217...   177   7e-45
AT5G42010.1 | Symbols:  | WD-40 repeat family protein | chr5:168...   158   3e-39
AT1G64610.2 | Symbols:  | WD-40 repeat family protein | chr1:239...   146   1e-35
AT1G64610.1 | Symbols:  | WD-40 repeat family protein | chr1:239...   146   1e-35
AT5G54200.1 | Symbols:  | WD-40 repeat family protein | chr5:219...   139   1e-33
AT3G15470.1 | Symbols:  | WD-40 repeat family protein | chr3:521...   131   4e-31
AT2G37670.1 | Symbols:  | WD-40 repeat family protein | chr2:157...    99   4e-21
AT5G02430.1 | Symbols:  | WD-40 repeat family protein | chr5:526...    98   6e-21
AT1G48870.1 | Symbols:  | WD-40 repeat family protein | chr1:180...    77   1e-14

>AT5G24320.1 | Symbols:  | WD-40 repeat family protein |
           chr5:8284858-8287651 REVERSE
          Length = 694

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 145/273 (53%), Gaps = 50/273 (18%)

Query: 7   TNWCILHGSDGR-LQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDG 65
           T+ C  +   G  LQL    CL  KKKS++KRI GFQ+ S+DPSR+MV SADS+VRI+ G
Sbjct: 459 TSDCRFYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQFDSTDPSRVMVASADSQVRIISG 518

Query: 66  VDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEH 125
            +V+ KY+G  NAG+QISA FT+ G HI+SA +DS++YVWN    D   P   +     H
Sbjct: 519 RNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHD---PEQSSPGFFSH 575

Query: 126 F----------FSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELG 175
                      FS + SVAIPW G     S  S++  +               S+ +E  
Sbjct: 576 TKRLKIRSFEKFSADVSVAIPWCGFTPVLSGGSELSPSLF-------------SLGREYV 622

Query: 176 ESSQCKXXXXXXXXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSY 235
             S                       PKGSATWPEE L SS S    + +S YKFLR+S 
Sbjct: 623 LDS-----------------------PKGSATWPEEKLASSFSPVKAIRRSHYKFLRSSC 659

Query: 236 QSVHGSPHAWNLAIVTAGWDGRIRWFQNYGLPV 268
           +    S H W L IVT GWDGRI+ F NYGLPV
Sbjct: 660 RRTSESSHLWGLVIVTGGWDGRIKLFHNYGLPV 692


>AT5G24320.2 | Symbols:  | WD-40 repeat family protein |
           chr5:8284858-8287651 REVERSE
          Length = 698

 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/277 (41%), Positives = 145/277 (52%), Gaps = 54/277 (19%)

Query: 7   TNWCILHGSDGR-LQLHAQKCLQGKKKSASKRITGFQYF----SSDPSRLMVTSADSKVR 61
           T+ C  +   G  LQL    CL  KKKS++KRI GFQ+     S+DPSR+MV SADS+VR
Sbjct: 459 TSDCRFYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDPSRVMVASADSQVR 518

Query: 62  ILDGVDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNW 121
           I+ G +V+ KY+G  NAG+QISA FT+ G HI+SA +DS++YVWN    D   P   +  
Sbjct: 519 IISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHD---PEQSSPG 575

Query: 122 ACEHF----------FSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVH 171
              H           FS + SVAIPW G     S  S++  +               S+ 
Sbjct: 576 FFSHTKRLKIRSFEKFSADVSVAIPWCGFTPVLSGGSELSPSLF-------------SLG 622

Query: 172 KELGESSQCKXXXXXXXXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFL 231
           +E    S                       PKGSATWPEE L SS S    + +S YKFL
Sbjct: 623 REYVLDS-----------------------PKGSATWPEEKLASSFSPVKAIRRSHYKFL 659

Query: 232 RTSYQSVHGSPHAWNLAIVTAGWDGRIRWFQNYGLPV 268
           R+S +    S H W L IVT GWDGRI+ F NYGLPV
Sbjct: 660 RSSCRRTSESSHLWGLVIVTGGWDGRIKLFHNYGLPV 696


>AT5G53500.1 | Symbols:  | WD-40 repeat family protein |
           chr5:21726167-21728524 REVERSE
          Length = 654

 Score =  177 bits (449), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/250 (43%), Positives = 144/250 (57%), Gaps = 41/250 (16%)

Query: 19  LQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRGIHNA 78
           L+L +Q  L  KKKS++KRITGFQ+   +P++++V SADSKVRIL G +V+ KY+G+   
Sbjct: 444 LELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVRILQGNNVVRKYKGVCKT 503

Query: 79  GSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEHFFSNNASVAIPWP 138
            S  SA  TS G HI+SA EDSN+Y+W+   ++    ++++       FS NASVA  W 
Sbjct: 504 RSLTSASLTSDGKHIVSACEDSNVYIWSND-EESETKKIRSF----ERFSANASVAATWC 558

Query: 139 GLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXXXXXXXXHGFFS 198
           G +  N        TTLPF +S  C       H E                     GF  
Sbjct: 559 GFSDHN--------TTLPF-SSPSCLS-----HNE---------------------GFVP 583

Query: 199 ESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSPHAWNLAIVTAGWDGRI 258
            S+ KGSATWPEENLP++   +  M  S YKFL++SYQ    S  +W + IVT GWDG+I
Sbjct: 584 GSISKGSATWPEENLPANPLSTSAMNASHYKFLKSSYQRA-SSSLSWGMVIVTGGWDGQI 642

Query: 259 RWFQNYGLPV 268
           R FQNYGLPV
Sbjct: 643 RTFQNYGLPV 652


>AT5G42010.1 | Symbols:  | WD-40 repeat family protein |
           chr5:16802280-16804757 FORWARD
          Length = 709

 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/271 (37%), Positives = 140/271 (51%), Gaps = 48/271 (17%)

Query: 13  HGSDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKY 72
           H +D +LQL     L GKKK  +KRITGFQ+F  D  ++MVTSADS++RI+ GVD ICK 
Sbjct: 474 HTTDNQLQLDRDISLHGKKKVPNKRITGFQFFPGDSDKVMVTSADSQIRIICGVDTICKL 533

Query: 73  RGIHNAGSQIS----ALFTSGGTHIISASEDSNIYVWNYAI--KDGPVPRVKTNWACEHF 126
           +   +  + +     A FTS G HI+S  E+S I+VW+++   K     + KT  + E F
Sbjct: 534 KKASSLRTTLMSPTFASFTSDGKHIVSTIEESGIHVWDFSQPNKKASSQKPKTIRSYEGF 593

Query: 127 FSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXX 186
            S N SVAIPW G    +S  +D+ ++   F                             
Sbjct: 594 LSRNVSVAIPWLGQGKEDSIIADLEKSFAHF----------------------------- 624

Query: 187 XXXXXXXHGFFSESLPKGSATWPEENL------PSSLSMSPKMFKSQYKFLRTSYQSVHG 240
                    +FS    KG+ TWPEE L       ++   +    +S+ + L++  Q+VHG
Sbjct: 625 ----PVPLDYFSPM--KGATTWPEEKLGVVAGTAAAAVSATVSSRSKLRLLKSVCQNVHG 678

Query: 241 S-PHAWNLAIVTAGWDGRIRWFQNYGLPVRL 270
           S PH W L IVTA WDG IR F NYGLP+R+
Sbjct: 679 STPHLWGLVIVTATWDGSIRVFHNYGLPIRV 709


>AT1G64610.2 | Symbols:  | WD-40 repeat family protein |
           chr1:23998920-24001297 REVERSE
          Length = 647

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 137/263 (52%), Gaps = 52/263 (19%)

Query: 13  HGSDGRLQLHAQKCLQGKKKSASKRITGFQYF--SSDPSRLMVTSADSKVRILDGVDVIC 70
           H  + +LQ+  +  + GKKK ASKRI+G QY    SD  ++MVTSADS++RI+ G DVIC
Sbjct: 432 HIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQIRIICGEDVIC 491

Query: 71  KYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWAC---EHFF 127
           K +   ++    SA F S G HIIS SEDS I VW+Y+      P  +T  +    E F 
Sbjct: 492 KLKA--SSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSETPKSIRSYEGFL 549

Query: 128 SNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXX 187
           S+NASVAIPW             +R       SE   +  M + K       C       
Sbjct: 550 SHNASVAIPW-------------LRQGRRDGLSECITDLDMKIPK-----VDC------- 584

Query: 188 XXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSPHAWNL 247
                    FS    KGS TWPEE L   ++MS    + + K LR+++Q     PH W L
Sbjct: 585 ---------FSPM--KGSTTWPEEKL-EDVAMSN---RGKLKLLRSAWQ-----PHLWGL 624

Query: 248 AIVTAGWDGRIRWFQNYGLPVRL 270
            IVTA WDGRIR F NYGLP+R+
Sbjct: 625 VIVTATWDGRIRVFHNYGLPIRV 647


>AT1G64610.1 | Symbols:  | WD-40 repeat family protein |
           chr1:23998920-24001297 REVERSE
          Length = 647

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 137/263 (52%), Gaps = 52/263 (19%)

Query: 13  HGSDGRLQLHAQKCLQGKKKSASKRITGFQYF--SSDPSRLMVTSADSKVRILDGVDVIC 70
           H  + +LQ+  +  + GKKK ASKRI+G QY    SD  ++MVTSADS++RI+ G DVIC
Sbjct: 432 HIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQIRIICGEDVIC 491

Query: 71  KYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWAC---EHFF 127
           K +   ++    SA F S G HIIS SEDS I VW+Y+      P  +T  +    E F 
Sbjct: 492 KLKA--SSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSETPKSIRSYEGFL 549

Query: 128 SNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXX 187
           S+NASVAIPW             +R       SE   +  M + K       C       
Sbjct: 550 SHNASVAIPW-------------LRQGRRDGLSECITDLDMKIPK-----VDC------- 584

Query: 188 XXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSPHAWNL 247
                    FS    KGS TWPEE L   ++MS    + + K LR+++Q     PH W L
Sbjct: 585 ---------FSPM--KGSTTWPEEKL-EDVAMSN---RGKLKLLRSAWQ-----PHLWGL 624

Query: 248 AIVTAGWDGRIRWFQNYGLPVRL 270
            IVTA WDGRIR F NYGLP+R+
Sbjct: 625 VIVTATWDGRIRVFHNYGLPIRV 647


>AT5G54200.1 | Symbols:  | WD-40 repeat family protein |
           chr5:21993565-21997076 REVERSE
          Length = 825

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 136/266 (51%), Gaps = 20/266 (7%)

Query: 10  CILHGSDGRLQLHAQKCLQGKKKSASKR-ITGFQYFSSDPSRLMVTSADSKVRILDGVDV 68
           C+ +  D +LQ   +  L+ +KK    + ITGFQ+ +   S ++VTSADS+ R++DGVD+
Sbjct: 575 CLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRTRVVDGVDL 634

Query: 69  ICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNY--AIKDGPVPRVKTNWACEHF 126
           + K++G  N  SQISA  TS G  ++SASEDSN+YVWNY    + G   RV    + E+F
Sbjct: 635 VHKFKGFRNTNSQISASLTSNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVTVTNSYENF 694

Query: 127 FSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXX 186
           +  + SVA PWPG    N  ++   +++    N+             + + +  K     
Sbjct: 695 YCRDVSVAAPWPGKISNNHTNNSPEQSSFTANNNP---------PTPVNDPTNNKTVTNG 745

Query: 187 XXXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSP--HA 244
                    FF     + SATWPEE L   L+   +   S    +  S   V+  P   A
Sbjct: 746 IISSATNRYFFD----RVSATWPEEKL--LLAAKNRARTSPRVSVDMSNIQVNTKPSASA 799

Query: 245 WNLAIVTAGWDGRIRWFQNYGLPVRL 270
           W++ IVT    G IR FQN+G PVRL
Sbjct: 800 WSMVIVTGSLRGEIRIFQNFGFPVRL 825


>AT3G15470.1 | Symbols:  | WD-40 repeat family protein |
           chr3:5216630-5219868 REVERSE
          Length = 883

 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 136/274 (49%), Gaps = 25/274 (9%)

Query: 11  ILHGSDGRLQLHAQKCLQGKKKSASKR-ITGFQYFSSDPSRLMVTSADSKVRILDGVDVI 69
           +   SD +LQ  +Q  LQ KKK A ++ ITGFQ+     S ++VTS+DS++R++DG D++
Sbjct: 621 MYSASDNKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLV 680

Query: 70  CKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPR---------VKTN 120
            K +G  N  SQISA  T+ G +++SASEDS++Y+W Y   + P  R         V   
Sbjct: 681 NKLKGFRNTSSQISASITADGKYVVSASEDSHVYIWKY---ESPASRPSRSNNNKNVTVT 737

Query: 121 WACEHFFSNNASVAIPWPGLAC----GNSASSDIMRTTLPFMNSERCNEEQMSVHKELGE 176
            + EHF S + S AI WPG+A     G    +    +T    N    N     V  +LG 
Sbjct: 738 NSYEHFHSQDVSAAISWPGMASTENWGTQNRAGFNGSTNNLDNISTANHPPTPV-DQLGT 796

Query: 177 SSQCKXXXXXXXXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQ 236
             +                FF     + SATWPEE L  + + S     +       +  
Sbjct: 797 VERLNSPRNGIISSATNGYFFD----RMSATWPEEKLLFARNRSGNRLSTDMSSSNGNSG 852

Query: 237 SVHGSPHAWNLAIVTAGWDGRIRWFQNYGLPVRL 270
           +V  S   W + IVTAG  G IR FQN+GLP+R+
Sbjct: 853 NVSAS---WGMVIVTAGLRGEIRTFQNFGLPIRI 883


>AT2G37670.1 | Symbols:  | WD-40 repeat family protein |
           chr2:15797384-15800536 REVERSE
          Length = 903

 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 3/129 (2%)

Query: 16  DGRLQLHAQKCLQGKKKSASKR-ITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRG 74
           D +L    Q  +Q  KKS +KR IT FQ+   +PS ++VTSADS++RILDG +VI K++G
Sbjct: 619 DCKLSQTNQIDVQSNKKSQAKRKITSFQFSPVNPSEVLVTSADSRIRILDGSEVIHKFKG 678

Query: 75  IHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEHFFSNNASVA 134
             N  SQ+SA ++  G +II ASEDS +Y+W             T  + EHF   + S A
Sbjct: 679 FRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFHR--TRSTLTTQSHEHFHCKDVSAA 736

Query: 135 IPWPGLACG 143
           +PW G   G
Sbjct: 737 VPWHGHVRG 745


>AT5G02430.1 | Symbols:  | WD-40 repeat family protein |
           chr5:526592-529839 FORWARD
          Length = 905

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%)

Query: 2   VALVNTNWCILHGSDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVR 61
           V  +N +  +    D +L+   Q  LQ KKK+ +K+IT FQ+   +PS ++VTSADS++R
Sbjct: 618 VGSINGHCRLYSAEDCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIR 677

Query: 62  ILDGVDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNW 121
           +LDG +++ K+RG  N  SQ++A +T    HI+ ASEDS +YVW +      +   KT  
Sbjct: 678 VLDGTELVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWKHEEPRLGITGRKTVT 737

Query: 122 AC---EHFFSNNASVAIPWPGLACGNSASS 148
            C   E F   + SVA+PW G+  G   S+
Sbjct: 738 MCTSYETFPCKDVSVAVPWNGVVKGEPPST 767


>AT1G48870.1 | Symbols:  | WD-40 repeat family protein |
           chr1:18072325-18074457 REVERSE
          Length = 593

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 104/258 (40%), Gaps = 58/258 (22%)

Query: 16  DGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRGI 75
           D  + +  Q  ++G+      RIT  ++      +++V+S DSKVRI D   +I K++  
Sbjct: 385 DNDVIMDEQILIRGRN-----RITAVEFCPGSSEKILVSSEDSKVRIFDKTQMIHKFKAP 439

Query: 76  HNAGSQISALFTSG-GTHIISASEDSNIYVWNYAIKDGPVPR--VKTNWACEHFFSNNAS 132
            N G Q SA F S  G HI+S      +Y+WN    D    R   K++ + E+F S   S
Sbjct: 440 SNFGRQSSASFVSSTGKHILSVRRGVGVYLWN---NDAFPSRKGAKSSRSFEYFHSPGVS 496

Query: 133 VAIPW--PGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXXXXX 190
               W  P       A  D               EE   V +++  S             
Sbjct: 497 AVAAWTQPETKVSKVAGDD---------------EESRRVMRKIQSS------------- 528

Query: 191 XXXHGFFSESLPKGSATWPEENLPSSL-SMSPKMFKSQYKFLRTSYQSVHGSPHAWNLAI 249
               G  S S  + +ATWPEE L  ++ S    +   ++               AW L I
Sbjct: 529 ----GRLSRSC-RVTATWPEEKLLMNVGSYDSNLPVGEFDL-----------AEAWRLVI 572

Query: 250 VTAGWDGRIRWFQNYGLP 267
           VT   DG IR F NYGLP
Sbjct: 573 VTVSLDGMIRTFHNYGLP 590