Jatropha Genome Database

JcCB0073371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0073371.10 - phase: 2 /partial
         (280 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR...   114   7e-26
AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR ...    97   8e-21

>AT2G22840.1 | Symbols: AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR
           1); transcription activator | chr2:9728841-9731141
           FORWARD
          Length = 530

 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 57/239 (23%)

Query: 6   ENLGERMQDSPSLSMPPSNINMKSRENPFLNLEQQNSYQESSQIEFGLVNSDSLLNPSQN 65
           ++L  R+Q+S   S+ P+ +N++S+E         +  Q ++  EFGL++SDSLLNPS  
Sbjct: 300 DSLANRVQNSRGASVFPATMNLQSKET--------HPKQSNNPFEFGLISSDSLLNPSHK 351

Query: 66  GSSLI--SRNFGSSKELIGQETISQHSVRQF-MDDWPKSQCDQSAVSWPPLDVQSNRTQL 122
            +S    S+ FGS  +   Q   ++H+     +D WP+             +++S+ TQL
Sbjct: 352 QASYATSSKGFGSYLDFGNQ---AKHAGNHNNVDSWPE-------------ELKSDWTQL 395

Query: 123 SISIPIASADFXXXXXXXNNEKIAPSPLRLSCDLD-SIKMGTGTGIILNEQNQRHANWIP 181
           S+SIP+A +           +K+A SPLRLS + D +I MG G      +  ++  NWIP
Sbjct: 396 SMSIPMAPS-------SPVQDKLALSPLRLSREFDPAIHMGLGVNTEFLDPGKKTNNWIP 448

Query: 182 IPWGT--SMGGPLGEVLHNTNNTASECKNSSALNLLAEGWDCSPRLGSSPTGVLQKTTF 238
           I WG   SMGGPLGEVL++T N                    SP+ GSSPTGVLQK+TF
Sbjct: 449 ISWGNNNSMGGPLGEVLNSTTN--------------------SPKFGSSPTGVLQKSTF 487


>AT4G37740.1 | Symbols: AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR 2);
           transcription activator | chr4:17725533-17727609 REVERSE
          Length = 535

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 54/253 (21%)

Query: 10  ERMQDSPSLSMPPSNINMKSRENPFLNLEQQNSYQESSQIEFGLVNSDSLLNP---SQNG 66
           E + ++  +S+ PS +N++ +E+P ++ + +N+   ++  EFG ++SDSLLNP      G
Sbjct: 323 ESLPNNRGVSIYPSTVNLQPKESPVIHQKHRNN---NNPFEFGHISSDSLLNPNTAKTYG 379

Query: 67  SSLISRNFGSSKELIGQETISQHSVRQFMDDWPKSQCDQSAVSWPPLDVQSNRTQLSISI 126
           SS +  +F S++E        +HS     + WP+             ++ S+ TQLS+SI
Sbjct: 380 SSFL--DFSSNQE--------KHSGNHNHNSWPE-------------ELTSDWTQLSMSI 416

Query: 127 PIASADFXXXXXXXN-NEKIAPSPLRLSCDLD-SIKMGTGTGIILNEQNQRHANWIPIPW 184
           PIAS+         N  EK   SPLRLS +LD SI+    T   +    ++   WIPI W
Sbjct: 417 PIASSSPSSTHNNNNAQEKTTLSPLRLSRELDLSIQTDETT---IEPTVKKVNTWIPISW 473

Query: 185 GTSMGGPLGEVLHNTNNTASECKNSSALNLLAEGWDCSPRLGSSPTGVLQKTTFHSLSNS 244
           G S+GGPLGEVL++T N                    SP  GSSPTGVLQK+TF SLSN+
Sbjct: 474 GNSLGGPLGEVLNSTTN--------------------SPTFGSSPTGVLQKSTFCSLSNN 513

Query: 245 SAGSSPRAENNKN 257
           S+ SSP AENN++
Sbjct: 514 SSVSSPIAENNRH 526