Jatropha Genome Database

JcCB0072841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0072841.10 + phase: 0 
         (119 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15740.1 | Symbols:  | unknown protein | chr5:5134788-5136956...    95   1e-20
AT3G02250.1 | Symbols:  | unknown protein | chr3:424185-426376 R...    95   1e-20

>AT5G15740.1 | Symbols:  | unknown protein | chr5:5134788-5136956
           REVERSE
          Length = 508

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 9   KEWEXXXXXXXXXXXXXXXNSMVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLL 68
           K WE               NS VSR  M LW++RA+T  LLW+C V LMALGEMWGPRL 
Sbjct: 12  KLWEMNVKLLGESKVEKLKNSFVSRPRMSLWMIRAVTVLLLWSCFVHLMALGEMWGPRLF 71

Query: 69  KGWPSCFSQSDV----HLSSIPPKVVLPPKSKF 97
           KGWPSCF+   +     ++S+P K+ LPPK  +
Sbjct: 72  KGWPSCFNHHQLSTAAEMTSLPTKIALPPKRVY 104


>AT3G02250.1 | Symbols:  | unknown protein | chr3:424185-426376
           REVERSE
          Length = 512

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 9   KEWEXXXXXXXXXXXXXXXNSMVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLL 68
           K WE               NS+V RS M LW++RA+T  LLW+C V L+A+GEMWGPRLL
Sbjct: 12  KLWEMKVKFLGDSKIDKLKNSLVLRSRMSLWMIRAMTILLLWSCFVHLVAVGEMWGPRLL 71

Query: 69  KGWPSCFSQSD----VHLSSIPPKVVLPPKSKFK 98
           KGWPSCF+  D      ++S+P K+ LPPK  ++
Sbjct: 72  KGWPSCFNHHDFPIAAEMTSLPMKIALPPKRIYQ 105