Jatropha Genome Database
- JcCB0071361.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0071361.20 - phase: 2 /partial
(169 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40570.1 | Symbols: | surfeit locus protein 2 family protein... 108 2e-24
AT5G40570.2 | Symbols: | surfeit locus protein 2 family protein... 107 2e-24
AT5G14440.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 82 2e-16
AT5G14440.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 82 2e-16
>AT5G40570.1 | Symbols: | surfeit locus protein 2 family protein /
SURF2 family protein | chr5:16246798-16248251 FORWARD
Length = 204
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 91/171 (53%), Gaps = 44/171 (25%)
Query: 1 SKLICKLTGDTVNKSEEHIWKHINGKRFLNKLEQKETEKVEGKQQEEEAKSSMDXXXXXX 60
SKL+CKLTGDTVNK+EEHIWKH+NGKRFL+KLEQ E + EE
Sbjct: 76 SKLVCKLTGDTVNKNEEHIWKHVNGKRFLHKLEQVERGAGSSGRTEE------------- 122
Query: 61 XXXXXXXXXXXPVDEIISEVRN--FSDKDSDSEEVDFWIPPAGEPWDFDDGGDRWXXXXX 118
++V N + +DS SEE DFW+P + + D+ D
Sbjct: 123 -----------------TQVNNPRHNKEDSGSEESDFWMPKSSSDSELDEETD------- 158
Query: 119 XXXXXXXXXXAVEDNGKESEELSKCTKRMSIEIGPSSFASRKKKTKKNSAS 169
+ KESEELS+ TKRMS+EIGPSSFASRKKK+K + S
Sbjct: 159 -----EENCKGSHCDDKESEELSERTKRMSLEIGPSSFASRKKKSKNDELS 204
>AT5G40570.2 | Symbols: | surfeit locus protein 2 family protein /
SURF2 family protein | chr5:16246798-16248251 FORWARD
Length = 211
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 91/171 (53%), Gaps = 44/171 (25%)
Query: 1 SKLICKLTGDTVNKSEEHIWKHINGKRFLNKLEQKETEKVEGKQQEEEAKSSMDXXXXXX 60
SKL+CKLTGDTVNK+EEHIWKH+NGKRFL+KLEQ E + EE
Sbjct: 83 SKLVCKLTGDTVNKNEEHIWKHVNGKRFLHKLEQVERGAGSSGRTEE------------- 129
Query: 61 XXXXXXXXXXXPVDEIISEVRN--FSDKDSDSEEVDFWIPPAGEPWDFDDGGDRWXXXXX 118
++V N + +DS SEE DFW+P + + D+ D
Sbjct: 130 -----------------TQVNNPRHNKEDSGSEESDFWMPKSSSDSELDEETD------- 165
Query: 119 XXXXXXXXXXAVEDNGKESEELSKCTKRMSIEIGPSSFASRKKKTKKNSAS 169
+ KESEELS+ TKRMS+EIGPSSFASRKKK+K + S
Sbjct: 166 -----EENCKGSHCDDKESEELSERTKRMSLEIGPSSFASRKKKSKNDELS 211
>AT5G14440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833);
BEST Arabidopsis thaliana protein match is: surfeit
locus protein 2 family protein / SURF2 family protein
(TAIR:AT5G40570.1); Has 6533 Blast hits to 4299 proteins
in 259 species: Archae - 4; Bacteria - 127; Metazoa -
2727; Fungi - 698; Plants - 260; Viruses - 77; Other
Eukaryotes - 2640 (source: NCBI BLink). |
chr5:4656065-4657807 REVERSE
Length = 292
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 67/127 (52%), Gaps = 16/127 (12%)
Query: 1 SKLICKLTGDTVNKSEEHIWKHINGKRFLNK--------------LEQKETEKVEGKQQE 46
SKL CKLTGDTVNK+EEHIWKHI G+RFLN+ E ET E ++
Sbjct: 81 SKLKCKLTGDTVNKTEEHIWKHITGRRFLNRLEEKEREKESGSIPAEGGETPAKENGVED 140
Query: 47 EEAKSSMDXXXXXXXXXXXXXXXXXPVDEIISEVRNFSDKDSDSEEVDFWIPPAGEPWDF 106
E+ K D + E+ + +D ++ EE++FW+PP GE WDF
Sbjct: 141 EDKKKKKKKNNKKKKNKKSVEKKKNGED-VADEIEHEND-EAVEEELEFWMPPDGERWDF 198
Query: 107 DDGGDRW 113
DDG DRW
Sbjct: 199 DDGRDRW 205
>AT5G14440.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833);
BEST Arabidopsis thaliana protein match is: surfeit
locus protein 2 family protein / SURF2 family protein
(TAIR:AT5G40570.1); Has 6513 Blast hits to 4273 proteins
in 255 species: Archae - 4; Bacteria - 122; Metazoa -
2676; Fungi - 730; Plants - 236; Viruses - 90; Other
Eukaryotes - 2655 (source: NCBI BLink). |
chr5:4656065-4657807 REVERSE
Length = 291
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 67/127 (52%), Gaps = 16/127 (12%)
Query: 1 SKLICKLTGDTVNKSEEHIWKHINGKRFLNK--------------LEQKETEKVEGKQQE 46
SKL CKLTGDTVNK+EEHIWKHI G+RFLN+ E ET E ++
Sbjct: 81 SKLKCKLTGDTVNKTEEHIWKHITGRRFLNRLEEKEREKESGSIPAEGGETPAKENGVED 140
Query: 47 EEAKSSMDXXXXXXXXXXXXXXXXXPVDEIISEVRNFSDKDSDSEEVDFWIPPAGEPWDF 106
E+ K D + E+ + +D ++ EE++FW+PP GE WDF
Sbjct: 141 EDKKKKKKKNNKKKKNKKSVEKKKNGED-VADEIEHEND-EAVEEELEFWMPPDGERWDF 198
Query: 107 DDGGDRW 113
DDG DRW
Sbjct: 199 DDGRDRW 205