Jatropha Genome Database

JcCB0070971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070971.10 + phase: 0 /partial
         (370 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS...   192   4e-49
AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS...   115   5e-26

>AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | CDT1A (ARABIDOPSIS
           HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein
           kinase/ protein binding | chr2:13329037-13331544 FORWARD
          Length = 571

 Score =  192 bits (487), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/251 (46%), Positives = 155/251 (61%), Gaps = 29/251 (11%)

Query: 134 LLATPCKDMDSINCRDSSAEEIAS---FQSTPAKLASTPAALKSATPALRPPKRC--YMS 188
           +L TP K + ++    S+   I S     +TP + ASTPA L S + A RP KR   + +
Sbjct: 323 ILPTPVKPVSTLAKFPSTPAIIDSTPVITATPPEFASTPARLMSTSLAARPLKRSNGHTN 382

Query: 189 PDEDSSSLADKLVRR---------PPRARSLNF--ETPVKNVKNELNGMENVSADNHXXX 237
           PD+ S+    KLVRR         P   R+++F  + P+  V  E     +VS+D+    
Sbjct: 383 PDDISADPPTKLVRRSLSLNFDSYPEDERTMDFTDDIPIDQVPEE-----DVSSDDE--- 434

Query: 238 XXXXXILNILPESLLQSIREKERKVQEERDPAISLAKRRRQMVACLPKLFNVIHFLFQSI 297
                IL+ILP+ L  +I+E+ERK  E+++PAISLAKRRR+M+ACLPKLFNVIH+L QSI
Sbjct: 435 -----ILSILPDKLRHAIKEQERKAIEDQNPAISLAKRRRKMIACLPKLFNVIHYLIQSI 489

Query: 298 NRSVITKEELIHKIIAGHSDIVDRRXXXXXXXXXXXXXXXWISEKSASSGDLLFCINKMS 357
            R VITKEEL+HKIIAGHSDI DR+               W+SEK +SSGD+L CINK++
Sbjct: 490 RRWVITKEELVHKIIAGHSDITDRKEVEEQLILLQEIVPEWMSEKKSSSGDVLVCINKLA 549

Query: 358 SAENIRSRLEE 368
           S   IRSRLEE
Sbjct: 550 SPLTIRSRLEE 560


>AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | CDT1B (ARABIDOPSIS
           HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1
           B); cyclin-dependent protein kinase |
           chr3:20251885-20254031 FORWARD
          Length = 486

 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 125/247 (50%), Gaps = 49/247 (19%)

Query: 160 STPAKLASTPAALKSATPALRPPKRCY-MSP---DEDSSSLADKLVRRPPRARSLNFETP 215
           STP+K  STP  L SATP L+  KRC  ++P   D++S    + L R P  +RSLNF+T 
Sbjct: 243 STPSKDLSTPIRLMSATPTLQLSKRCIELTPEGGDDNSLRSTNSLARGP--SRSLNFDTF 300

Query: 216 VKNVKNELNGMENVSADNHXXXXXXXXILNILPESLLQSIR-----------EKERKVQE 264
            ++   E + + N S D           +N   + LLQS++           E+E  V++
Sbjct: 301 EEDAI-EKDDIGNESDDKG---------INYEEDGLLQSVKGPSRSLNFDTLEEETIVKD 350

Query: 265 -------------ERDPAISLAKRRRQMVA---------CLPKLFNVIHFLFQSINRSVI 302
                        E D A       + M+           LP+L N+IH +F S NR+VI
Sbjct: 351 DISNESGDEKSNYEGDNASDDDSLLQSMIERPKTEPEKHNLPQLVNLIHRVFHSTNRTVI 410

Query: 303 TKEELIHKIIAGHSDIVDRRXXXXXXXXXXXXXXXWISEKSASSGDLLFCINKMSSAENI 362
           TKEEL++KIIA   +I DRR               WISE  ASSGDLL  INKMS+AE +
Sbjct: 411 TKEELLYKIIANQINITDRREVEEQLSLMLQLVPDWISETKASSGDLLVRINKMSTAETV 470

Query: 363 RSRLEEA 369
           R+RLEEA
Sbjct: 471 RARLEEA 477