Jatropha Genome Database

JcCB0070851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070851.10 - phase: 0 /partial
         (128 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05250.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   153   3e-38

>AT3G05250.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:1495635-1497387 FORWARD
          Length = 278

 Score =  153 bits (386), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 86/112 (76%)

Query: 17  DSNPCPICLGPFIQESYLDSCFHKFCYNCILRWTKVVAGKHSRAPSSVKCPLCKTENLSI 76
           D +PCPICLG F++ESYLD+CFHKFC+NCI +W KVV+ K S+  SSV CPLCKTENLSI
Sbjct: 18  DFDPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENLSI 77

Query: 77  IYGYDGSSFQRHCINETHEHSSFFSKAHKYRLRCYYTEPGTLSNIVNVSRYW 128
           I+ YDG SF+RH I+         +K  +YRL+CYYTE G L+++ +V+R+W
Sbjct: 78  IHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVARFW 129