Jatropha Genome Database

JcCB0070021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070021.10 - phase: 1 /TE
         (585 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...   184   2e-46
ATMG00310.1 | Symbols: ORF154 | hypothetical protein | chrM:9088...   118   1e-26
AT3G09510.1 | Symbols:  | nucleic acid binding | chr3:2921804-29...    93   4e-19
AT3G24255.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    67   3e-11
AT2G02650.1 | Symbols:  | reverse transcriptase-related | chr2:7...    55   2e-07
AT2G22440.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    49   8e-06

>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 170/339 (50%), Gaps = 14/339 (4%)

Query: 35  ALPAYCMSVFELPLCLCDELEKMMNSFWWGSKGSEKKLHWLAWNRMCGSKKDGGMGFRDL 94
           ALP Y M+ F LP  +C ++  ++  FWW +K   K +HW AW+ +   K +GG+GF+D+
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 95  HCFNMAMLAKQGXRLLTSPNTLLYRVFKSKYFRDRRLLDAQTGHHPSFVSRVIMSFNMVL 154
             FN+A+L KQ  R+L+ P +L+ +VFKS+YF     L+A  G  PSFV + I +   +L
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121

Query: 155 KHGVRWRVGNGRRISVVKDPWLSIDGAFYV-------EDDSLFIDNTLLVKDLLVEGERQ 207
           + G R  VGNG  I + +  WL    A            +   + + L V DL+ E  R+
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181

Query: 208 WDVAKIINLFSLMDIHTILDIPLSVRDLEDELIWHYDKKGNFSIKSCYYLALRVLGRGDE 267
           W    I  LF  ++   I ++    R + D   W Y   G++++KS Y++  +++ +   
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241

Query: 268 SIE------GEGWGSIWKFNVAPKVRDFIWRTLRNLLPTRWGLSRRGVNVDTTCPYC-DL 320
             E         +  IWK   +PK++ F+W+ L N LP    L+ R ++ ++ C  C   
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC 301

Query: 321 EEDINHALLLCTKVLEVWRVCRVEEAFTNLSFKSLYLQV 359
           +E +NH L  CT     W +  +          S+Y+ +
Sbjct: 302 KETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNL 340


>ATMG00310.1 | Symbols: ORF154 | hypothetical protein |
           chrM:90883-91347 REVERSE
          Length = 154

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 86/143 (60%), Gaps = 1/143 (0%)

Query: 35  ALPAYCMSVFELPLCLCDELEKMMNSFWWGSKGSEKKLHWLAWNRMCGSKKD-GGMGFRD 93
           ALP Y MS F L   LC +L   M  FWW S  +++K+ W+AW ++C SK+D GG+GFRD
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 94  LHCFNMAMLAKQGXRLLTSPNTLLYRVFKSKYFRDRRLLDAQTGHHPSFVSRVIMSFNMV 153
           L  FN A+LAKQ  R++  P+TLL R+ +S+YF    +++   G  PS+  R I+    +
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

Query: 154 LKHGVRWRVGNGRRISVVKDPWL 176
           L  G+   +G+G    V  D W+
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWI 144


>AT3G09510.1 | Symbols:  | nucleic acid binding |
           chr3:2921804-2923258 FORWARD
          Length = 484

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 18/233 (7%)

Query: 121 FKSKYFRDRRLLDAQTGHHPSFVSRVIMSFNMVLKHGVRWRVGNGRRISVVKDPWLSIDG 180
            K++YF+D  +LDA+     S+    ++    +LK G R  +G+G+ I +  D  +    
Sbjct: 1   MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60

Query: 181 AFYVEDDSLFIDNTLLVKDLLVEGERQ-----WDVAKIINLFSLMDIHTILDIPLSVRDL 235
              +  +  + + T  + +L    ER+     WD +KI       D   I  I L+    
Sbjct: 61  PRPLNTEETYKEMT--INNLF---ERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK 115

Query: 236 EDELIWHYDKKGNFSIKSCYYLALRVLGRGDESIEGEGWGSI------WKFNVAPKVRDF 289
            D++IW+Y+  G ++++S Y+L          +I     GSI      W   + PK++ F
Sbjct: 116 PDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPH-GSIDLKTRIWNLPIMPKLKHF 174

Query: 290 IWRTLRNLLPTRWGLSRRGVNVDTTCPYCDLE-EDINHALLLCTKVLEVWRVC 341
           +WR L   L T   L+ RG+ +D +CP C  E E INHAL  C      WR+ 
Sbjct: 175 LWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLS 227


>AT3G24255.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           RNA-directed DNA polymerase (reverse transcriptase),
           related (InterPro:IPR015706); BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT3G23910.1);
           Has 2302 Blast hits to 2235 proteins in 74 species:
           Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12;
           Plants - 1295; Viruses - 0; Other Eukaryotes - 105
           (source: NCBI BLink). | chr3:8789471-8793208 FORWARD
          Length = 746

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 126/347 (36%), Gaps = 51/347 (14%)

Query: 2   GFLKERMWKHINSWSNRFLSKAGREILIKSVIQALPAYCMSVFELPLCLCDELEKMMNSF 61
           G L E++   I  W+ R LS AGR  LI SVI +L  + MS F LP     E++ + +SF
Sbjct: 43  GPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSF 102

Query: 62  WWGSKGSEKKLHWLAWNRMCGSKKDGGMGFRDLHCFNMAMLAKQGXRLLTSPNTLLYRVF 121
            W       K   +AW+ +C  K +GG+G R L   N      +G     S NT L    
Sbjct: 103 LWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN------KGSFWSISGNTTLGSWM 156

Query: 122 KSKYFRDRRLLDAQTGHHPSFVSRVIMSFNMVLKHGVRWRVGNGRRISVVKDPWLSIDGA 181
             K  + R L                      +KH +     NG   S   D W  I   
Sbjct: 157 WKKILKHRALASG------------------FVKHDIH----NGSNTSFWFDNWSKIGRL 194

Query: 182 FYVEDDSLFIDNTLLVKDLLVEGERQWDVAKIINLFSLMDIHTIL----DIPLSVRDL-- 235
             V      ID  + +   + E         ++N       H  L    D+   VR    
Sbjct: 195 IDVTGHRGCIDMGITLHASVAEA--------VVNHRPRRHRHDTLLRIEDVIAEVRHQGL 246

Query: 236 ---EDELIWHYDKKGNFSI-KSCYYLALRVLGRGDESIEGEGWGSIWKFNVAPKVRDFIW 291
              ED + W    KGN  I K C+          +  ++   +  +W  +  PK     W
Sbjct: 247 TSGEDTVRW----KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAW 302

Query: 292 RTLRNLLPTRWGLSRRGVNVDTTCPYC-DLEEDINHALLLCTKVLEV 337
             ++N L T   +       D++C  C  L E  +H    C    EV
Sbjct: 303 IAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV 349


>AT2G02650.1 | Symbols:  | reverse transcriptase-related |
           chr2:735411-736546 FORWARD
          Length = 365

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 251 IKSCYYLALRVLGRGDESIEG-----EGWGSIWKFNVAPKVRDFIWRTLRNLLPTRWGLS 305
           ++S Y++A       +E+I+      E   +IWK +VAPK++ F+WR +   L T   L 
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65

Query: 306 RRGVNVDTTCPYCDLEED-INHALLLCTKVLEVWRVCRV 343
            R ++ D  C  C +EE+ I+H +  C     VWR   +
Sbjct: 66  SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANI 104


>AT2G22440.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: reverse transcriptase, putative / RNA-dependent DNA
           polymerase, putative (TAIR:AT4G29090.1); Has 149 Blast
           hits to 133 proteins in 5 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr2:9528910-9529917 FORWARD
          Length = 256

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 170 VVKDPWLSIDGAFYVEDDSLFIDNTLLVKDLLVEGERQWDVAKIINLFSLMDIHTILDIP 229
           V KDPW+    A   +      D+ L V DL+ +    W + ++  L   +DI  IL I 
Sbjct: 5   VWKDPWIPTILARPAKSILNIRDSLLYVNDLIDQNTNLWKLDRLQALIDPVDIPLILGIR 64

Query: 230 LSVRDLEDELIWHYDKKGNFSIKSCYYLALRVLGRG--DESIEGEG 273
            S   L D   W + K GN+++KS Y++A R L R   D   +G G
Sbjct: 65  PSRTYLSDGFSWSHTKSGNYTVKSGYWVA-RDLSRPTCDPPFQGPG 109