Jatropha Genome Database

JcCB0069321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0069321.10 + phase: 2 /pseudo/partial
         (496 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55400.1 | Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP bindi...   790   0.0  
AT3G55400.2 | Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP bindi...   786   0.0  
AT4G13780.1 | Symbols:  | methionine--tRNA ligase, putative / me...   148   7e-36

>AT3G55400.1 | Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP binding
           / aminoacyl-tRNA ligase/ methionine-tRNA ligase/
           nucleotide binding | chr3:20535809-20538999 REVERSE
          Length = 616

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/466 (79%), Positives = 409/466 (87%), Gaps = 5/466 (1%)

Query: 23  SKSRKAAFCTYSISNDNRKNDEAGTAETFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQ 82
           S  ++A +CT S      +       ETFVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQ
Sbjct: 48  SSGKRALYCTSS-----SQESTVDEGETFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQ 102

Query: 83  RLLGKKVIFVTGTDEHGEKIXXXXXXXXXSPSEHCDVISQAYKTLWKDLEIAYDKFIRTT 142
           RLLGKKVIF+TGTDEHGEKI         +P EHCD+ISQ+Y+TLWKDL+IAYDKFIRTT
Sbjct: 103 RLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDLISQSYRTLWKDLDIAYDKFIRTT 162

Query: 143 DPKHEAIVKEFYSRVLANGDIYRADYEGLYCVNCEEYKDEKDLLDNKCCPVHLKPCIQRK 202
           DPKHEAIVKEFY+RV ANGDIYRADYEGLYCVNCEEYKDEK+LL+N CCPVH  PC+ RK
Sbjct: 163 DPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARK 222

Query: 203 EDNYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQSWIRSGLKDFSISRASVDWGIPVP 262
           EDNYFFALSKYQK LE+ L + P FVQPS+RLNEVQSWI+SGL+DFSISRA VDWGIPVP
Sbjct: 223 EDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVP 282

Query: 263 NDNKQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGWPASLHLIGKDILRFHAVYWPAM 322
           +D+KQTIYVWFDALLGYISAL+EDNKQ NL++AVS GWPASLHLIGKDILRFHAVYWPAM
Sbjct: 283 DDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAM 342

Query: 323 LMSAGLGLPKMVFGHGFLTKDGLKMGKSLGNTLEPNELIEKFGPDAVRYFFLREVEFGSD 382
           LMSAGL LPKMVFGHGFLTKDG+KMGKSLGNTLEP EL++KFGPDAVRYFFLREVEFG+D
Sbjct: 343 LMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGND 402

Query: 383 GDYSEERFVNIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDAAIAAEGNAFKDNVEKLV 442
           GDYSE+RF+ IVNAHLANTIGNLLNRTLGLLKKNC+STLVVD+ +AAEG   KD VEKLV
Sbjct: 403 GDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVVDSTVAAEGVPLKDTVEKLV 462

Query: 443 EKARIHYENLSLSLACEAVLEIGNAGNGYMDERTPWSLFXERGVGC 488
           EKAR +YENLSLS ACEAVLEIGNAGN YMD+R PW LF + GV  
Sbjct: 463 EKARTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSA 508


>AT3G55400.2 | Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP binding
           / aminoacyl-tRNA ligase/ methionine-tRNA ligase/
           nucleotide binding | chr3:20536263-20538999 REVERSE
          Length = 533

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/466 (79%), Positives = 409/466 (87%), Gaps = 5/466 (1%)

Query: 23  SKSRKAAFCTYSISNDNRKNDEAGTAETFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQ 82
           S  ++A +CT S      +       ETFVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQ
Sbjct: 48  SSGKRALYCTSS-----SQESTVDEGETFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQ 102

Query: 83  RLLGKKVIFVTGTDEHGEKIXXXXXXXXXSPSEHCDVISQAYKTLWKDLEIAYDKFIRTT 142
           RLLGKKVIF+TGTDEHGEKI         +P EHCD+ISQ+Y+TLWKDL+IAYDKFIRTT
Sbjct: 103 RLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDLISQSYRTLWKDLDIAYDKFIRTT 162

Query: 143 DPKHEAIVKEFYSRVLANGDIYRADYEGLYCVNCEEYKDEKDLLDNKCCPVHLKPCIQRK 202
           DPKHEAIVKEFY+RV ANGDIYRADYEGLYCVNCEEYKDEK+LL+N CCPVH  PC+ RK
Sbjct: 163 DPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARK 222

Query: 203 EDNYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQSWIRSGLKDFSISRASVDWGIPVP 262
           EDNYFFALSKYQK LE+ L + P FVQPS+RLNEVQSWI+SGL+DFSISRA VDWGIPVP
Sbjct: 223 EDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVP 282

Query: 263 NDNKQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGWPASLHLIGKDILRFHAVYWPAM 322
           +D+KQTIYVWFDALLGYISAL+EDNKQ NL++AVS GWPASLHLIGKDILRFHAVYWPAM
Sbjct: 283 DDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAM 342

Query: 323 LMSAGLGLPKMVFGHGFLTKDGLKMGKSLGNTLEPNELIEKFGPDAVRYFFLREVEFGSD 382
           LMSAGL LPKMVFGHGFLTKDG+KMGKSLGNTLEP EL++KFGPDAVRYFFLREVEFG+D
Sbjct: 343 LMSAGLELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGND 402

Query: 383 GDYSEERFVNIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVDAAIAAEGNAFKDNVEKLV 442
           GDYSE+RF+ IVNAHLANTIGNLLNRTLGLLKKNC+STLVVD+ +AAEG   KD VEKLV
Sbjct: 403 GDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVVDSTVAAEGVPLKDTVEKLV 462

Query: 443 EKARIHYENLSLSLACEAVLEIGNAGNGYMDERTPWSLFXERGVGC 488
           EKAR +YENLSLS ACEAVLEIGNAGN YMD+R PW LF + GV  
Sbjct: 463 EKARTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSA 508


>AT4G13780.1 | Symbols:  | methionine--tRNA ligase, putative /
           methionyl-tRNA synthetase, putative / MetRS, putative |
           chr4:7993366-7998433 REVERSE
          Length = 797

 Score =  148 bits (374), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 214/493 (43%), Gaps = 69/493 (13%)

Query: 51  FVLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKKVIFVTGTDEHGEKIXXXXXXX 109
            ++T+ L YVN  PH+G+     ++AD  AR+ RL G   I++ GTDE+G          
Sbjct: 19  ILITSALPYVNNVPHLGNIIGCVLSADVYARYCRLRGYNAIYICGTDEYGTATETKALEE 78

Query: 110 XXSPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYE 169
             +P E CD     +K ++    I++DKF RT+ P+   + +  ++++  N  +     +
Sbjct: 79  NCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEVCQAIFNKLWDNKWLSENTMQ 138

Query: 170 GLYCVNCEEYKDEK-------------------------------DLLDNKCCPVHLKPC 198
            LYC  C+++  ++                               +L D KC      P 
Sbjct: 139 QLYCDTCKKFLADRLVEGSCPFEGCNYDSARGDQCEKCGKLLNPTELKDPKCKVCQNTPR 198

Query: 199 IQRKEDNYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQS---WIRSGLKDFSISRASV 255
           I R  D+ F  L   +  LE  + +    V  S+  N +Q+   W+R GL+   I+R  +
Sbjct: 199 I-RDTDHLFIELPLLKDRLEAYIKK--TSVTGSWSQNAIQTTNAWLRDGLRQRCITR-DL 254

Query: 256 DWGIPVPNDN--KQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGW------PASLHL- 306
            WG+PVP++    +  YVWFDA +GY+S          + S  +S W      P ++ L 
Sbjct: 255 KWGVPVPHEKYKDKVFYVWFDAPIGYVS----------ITSCYTSEWEKWWKNPENVELY 304

Query: 307 --IGKDILRFHAVYWPAMLMSA--GLGLPKMVFGHGFLTKDGLKMGKSLGNTLEPNELIE 362
             +GKD + FH V +P+  +       L K +    +L  +  K  KS G  +  N++ +
Sbjct: 305 QFMGKDNVPFHTVMFPSTQLGTEENWTLMKTISVTEYLNYEDGKFSKSKGVGVFGNDVKD 364

Query: 363 KFGPDAV-RYFFLREVEFGSDGDYSEERFVNIVNAHLANTIGNLLNRTLGLLKK--NCQS 419
              P  V RY+ L      SD  +S       +N  L + +GN +NR L  + K  N   
Sbjct: 365 TNIPVEVWRYYLLTNRPEVSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAKPDNAGY 424

Query: 420 TLVVDAAIAAEGNAFKDNVEKLVEKARIHY----ENLSLSLACEAVLEIGNAGNGYMDER 475
             V+  A  AE ++   ++ + VEK    Y    E + L    +  + I + GN Y+   
Sbjct: 425 GSVIPDAHDAESHSLTKSLAEKVEKFVAEYVEAMEKVKLKQGLKTAMLISSEGNYYLQAS 484

Query: 476 TPWSLFXERGVGC 488
             W L+ E    C
Sbjct: 485 QFWKLYKEDKPLC 497