Jatropha Genome Database

JcCB0068571.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0068571.20 - phase: 0 
         (79 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26740.1 | Symbols: CCL | CCL (CCR-LIKE) | chr3:9827868-98284...    97   2e-21

>AT3G26740.1 | Symbols: CCL | CCL (CCR-LIKE) | chr3:9827868-9828461
           FORWARD
          Length = 141

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 3   SVFPAEACETIGGEACLADIYPEVKLEREARNEAGIASEPIEREYLDYNDAKTVFVGEAC 62
           SVFPAEACE I G AC ADIYPEVKL+ +  +   +ASEP++REY +YN  KTVF  EAC
Sbjct: 66  SVFPAEACEVISGYACSADIYPEVKLDTKPVSRP-VASEPVDREYEEYNSPKTVFREEAC 124

Query: 63  DDLGGEFCGFEYQK 76
           DDLGGEFC  ++QK
Sbjct: 125 DDLGGEFCEPDFQK 138