Jatropha Genome Database

JcCB0065971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065971.10 + phase: 0 
         (162 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18100.1 | Symbols: CSD3 | CSD3 (copper/zinc superoxide dismu...   215   9e-57
AT1G08830.2 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE DISMU...   194   2e-50
AT1G08830.1 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE DISMU...   194   2e-50
AT2G28190.1 | Symbols: CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXI...   180   4e-46
AT5G18100.2 | Symbols: CSD3 | CSD3 (copper/zinc superoxide dismu...   177   3e-45
AT1G12520.3 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1)...    69   2e-12
AT1G12520.2 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1)...    68   2e-12
AT1G12520.1 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1)...    68   3e-12

>AT5G18100.1 | Symbols: CSD3 | CSD3 (copper/zinc superoxide
           dismutase 3); superoxide dismutase |
           chr5:5987221-5988706 FORWARD
          Length = 164

 Score =  215 bits (548), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 124/145 (85%), Gaps = 1/145 (0%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G+ NVRG + FVQ  +G THVTG+I+GLSPG HGFHIH+FGDTTNGC STGPHFNP  + 
Sbjct: 16  GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRV 75

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAG 136
           HG P ++ERHAGDLGNI+ G +G+AE+ +KD  IPLSG +SILGRAVVVHADPDDLGK G
Sbjct: 76  HGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGK-G 134

Query: 137 GHELSKTTGNAGARVGCGIIGLHSS 161
           GH+LSK+TGNAG+RVGCGIIGL SS
Sbjct: 135 GHKLSKSTGNAGSRVGCGIIGLQSS 159


>AT1G08830.2 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE
           DISMUTASE 1); superoxide dismutase |
           chr1:2827700-2829053 FORWARD
          Length = 152

 Score =  194 bits (492), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 21  VRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHGAP 80
           V G+I F Q  +G T V+G ++GL PGLHGFH+HA GDTTNGC STGPHFNP  K HGAP
Sbjct: 14  VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAP 73

Query: 81  TDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAGGHEL 140
            D  RHAGDLGNI VG DG A  ++ D QIPL+GP+SI+GRAVVVHADPDDLGK GGHEL
Sbjct: 74  EDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGK-GGHEL 132

Query: 141 SKTTGNAGARVGCGIIGLH 159
           S  TGNAG RV CGIIGL 
Sbjct: 133 SLATGNAGGRVACGIIGLQ 151


>AT1G08830.1 | Symbols: CSD1 | CSD1 (COPPER/ZINC SUPEROXIDE
           DISMUTASE 1); superoxide dismutase |
           chr1:2827700-2829053 FORWARD
          Length = 152

 Score =  194 bits (492), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 21  VRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHGAP 80
           V G+I F Q  +G T V+G ++GL PGLHGFH+HA GDTTNGC STGPHFNP  K HGAP
Sbjct: 14  VTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAP 73

Query: 81  TDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAGGHEL 140
            D  RHAGDLGNI VG DG A  ++ D QIPL+GP+SI+GRAVVVHADPDDLGK GGHEL
Sbjct: 74  EDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGK-GGHEL 132

Query: 141 SKTTGNAGARVGCGIIGLH 159
           S  TGNAG RV CGIIGL 
Sbjct: 133 SLATGNAGGRVACGIIGLQ 151


>AT2G28190.1 | Symbols: CSD2, CZSOD2 | CSD2 (COPPER/ZINC SUPEROXIDE
           DISMUTASE 2); superoxide dismutase |
           chr2:12014548-12016303 FORWARD
          Length = 216

 Score =  180 bits (456), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G  +V G +   Q  +GPT V  RITGL+PG HGFH+H FGDTTNGC STGPHFNP    
Sbjct: 73  GTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMT 132

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAG 136
           HGAP D+ RHAGDLGNI    DG+AE ++ D QIPL+GP+S++GRA VVH   DDLGK G
Sbjct: 133 HGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGK-G 191

Query: 137 GHELSKTTGNAGARVGCGIIGL 158
           GHELS TTGNAG R+ CG+IGL
Sbjct: 192 GHELSLTTGNAGGRLACGVIGL 213


>AT5G18100.2 | Symbols: CSD3 | CSD3 (copper/zinc superoxide
           dismutase 3); superoxide dismutase |
           chr5:5987221-5988436 FORWARD
          Length = 137

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G+ NVRG + FVQ  +G THVTG+I+GLSPG HGFHIH+FGDTTNGC STGPHFNP  + 
Sbjct: 16  GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRV 75

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAG 136
           HG P ++ERHAGDLGNI+ G +G+AE+ +KD  IPLSG +SILGRAVVVHADPDDLGK  
Sbjct: 76  HGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGT 135

Query: 137 GH 138
            H
Sbjct: 136 KH 137


>AT1G12520.3 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1);
           superoxide dismutase/ superoxide dismutase copper
           chaperone | chr1:4267277-4268206 REVERSE
          Length = 184

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 19  PNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHG 78
           P++ G + F Q       +    TGLSPG H + I+ +GD TNG  STG  +NPF+   G
Sbjct: 35  PDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG 94

Query: 79  APTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDD 131
                    GDLG +    +G A  S K  ++ ++    ++GRAVVV+   D+
Sbjct: 95  T-----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 139


>AT1G12520.2 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1);
           superoxide dismutase/ superoxide dismutase copper
           chaperone | chr1:4267277-4268438 REVERSE
          Length = 229

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 19  PNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHG 78
           P++ G + F Q       +    TGLSPG H + I+ +GD TNG  STG  +NPF+   G
Sbjct: 80  PDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG 139

Query: 79  APTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDD 131
                    GDLG +    +G A  S K  ++ ++    ++GRAVVV+   D+
Sbjct: 140 T-----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 184


>AT1G12520.1 | Symbols: ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1);
           superoxide dismutase/ superoxide dismutase copper
           chaperone | chr1:4267277-4268900 REVERSE
          Length = 320

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 19  PNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHG 78
           P++ G + F Q       +    TGLSPG H + I+ +GD TNG  STG  +NPF+   G
Sbjct: 171 PDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTG 230

Query: 79  APTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDD 131
                    GDLG +    +G A  S K  ++ ++    ++GRAVVV+   D+
Sbjct: 231 T-----EPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVYKTDDN 275