Jatropha Genome Database

JcCB0065721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065721.10 - phase: 0 
         (105 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    82   7e-17
AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    81   1e-16

>AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing
          protein | chr3:6596082-6598667 FORWARD
          Length = 462

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 50/57 (87%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLET 57
          MVSD DLVTRLRE+L  SDL+TAT  S+RR+LE +FGV+L+D+KA+IR+QID +LE+
Sbjct: 1  MVSDLDLVTRLREILGSSDLNTATPASVRRQLEADFGVDLTDKKAYIRDQIDTFLES 57


>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
          protein | chr1:18329736-18331691 FORWARD
          Length = 372

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLET 57
          MVSDSDLVT+LRE+L+ SDL+T T  S+RR+LE  FGV L+D+KAF+REQID +LE+
Sbjct: 1  MVSDSDLVTQLREILRSSDLETTTPASVRRQLEVYFGVELTDKKAFVREQIDAFLES 57