Jatropha Genome Database

JcCB0065691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065691.10 - phase: 0 
         (133 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14600.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   213   3e-56
AT1G29060.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   189   3e-49

>AT4G14600.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Target SNARE coiled-coil region
           (InterPro:IPR000727); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G29060.1); Has 95
           Blast hits to 95 proteins in 38 species: Archae - 0;
           Bacteria - 0; Metazoa - 27; Fungi - 19; Plants - 44;
           Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
           | chr4:8376562-8378078 FORWARD
          Length = 137

 Score =  213 bits (542), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 120/136 (88%), Gaps = 3/136 (2%)

Query: 1   MAASSSR---GGSFYGGAAPYRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQV 57
           MA++  R   GGS YGGAAPYRS++GLSTR AA S+EIQLRIDPMH+D DDEI+GL  QV
Sbjct: 1   MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60

Query: 58  KQLRNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLF 117
           +QL+N+AQEIGSEAKFQ+DFLD+LQMT+I+AQAGVKNNIRKLN SII++G NHI+HVVLF
Sbjct: 61  RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120

Query: 118 ALLCFTVVYLWSKVLQ 133
           ALL F V+Y+WSK+ +
Sbjct: 121 ALLVFFVLYIWSKMFK 136


>AT1G29060.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; EXPRESSED IN:
           24 plant structures; EXPRESSED DURING: 14 growth stages;
           CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil
           region (InterPro:IPR000727); BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT4G14600.1);
           Has 95 Blast hits to 95 proteins in 34 species: Archae -
           0; Bacteria - 0; Metazoa - 28; Fungi - 15; Plants - 47;
           Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
           | chr1:10147857-10149459 FORWARD
          Length = 134

 Score =  189 bits (481), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 116/133 (87%)

Query: 1   MAASSSRGGSFYGGAAPYRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQVKQL 60
           MA++   GGS YGGA PYRS++GLSTR A+ S+EIQLRIDPMH+D DDEI GL  QV+QL
Sbjct: 1   MASNRGAGGSLYGGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQL 60

Query: 61  RNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFALL 120
           +N+AQEIGSEAK Q+DFLD+LQMT+I+AQAGVKNNIRKLN SII++G NHI+HVVLFALL
Sbjct: 61  KNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALL 120

Query: 121 CFTVVYLWSKVLQ 133
            F ++Y+WSK+ +
Sbjct: 121 LFFILYMWSKMFK 133