Jatropha Genome Database

JcCB0064411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064411.20 - phase: 1 /pseudo/partial
         (199 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26180.1 | Symbols: IQD6 | IQD6 (IQ-domain 6); calmodulin bin...    92   2e-19

>AT2G26180.1 | Symbols: IQD6 | IQD6 (IQ-domain 6); calmodulin
           binding | chr2:11143433-11144982 REVERSE
          Length = 416

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 86/154 (55%), Gaps = 14/154 (9%)

Query: 34  LASKNSKSSEQS-FVKVRKNNVSTRISAKPPIGQVTRXXXXXXXXXXXXXXXXXXXXXXX 92
           L  K+ KS E +  V+VR+NNV+TR+SAKPP   ++                        
Sbjct: 272 LPHKHLKSPETADVVQVRRNNVTTRVSAKPPPHMLS-----SSPGYEFNESSGSSSICTS 326

Query: 93  XXXXXGNTGLASDRTE-ESGNSKPNYMNLTESTKAKRKTTNHLSHRIQRQSMDEFQFLKR 151
                G TGL SD +  ++   KP+YM+LTESTKAKR+T   L     RQSMDEFQF+K 
Sbjct: 327 TTPVSGKTGLVSDNSSSQAKKHKPSYMSLTESTKAKRRTNRGL-----RQSMDEFQFMKN 381

Query: 152 SAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDK 185
           S  F+ E  K+S  SD P ++ SKPL +PTR +K
Sbjct: 382 SGMFTGE-LKTSPSSD-PFVSFSKPLGVPTRFEK 413