Jatropha Genome Database

JcCB0064191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.20 + phase: 0 
         (185 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G77400.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    52   2e-07

>AT1G77400.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 8 plant
           structures; EXPRESSED DURING: petal differentiation and
           expansion stage, D bilateral stage, E expanded cotyledon
           stage; BEST Arabidopsis thaliana protein match is:
           hydroxyproline-rich glycoprotein family protein
           (TAIR:AT1G21695.1); Has 289 Blast hits to 275 proteins
           in 50 species: Archae - 0; Bacteria - 12; Metazoa - 127;
           Fungi - 25; Plants - 67; Viruses - 10; Other Eukaryotes
           - 48 (source: NCBI BLink). | chr1:29085881-29086579
           FORWARD
          Length = 232

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 46/107 (42%), Gaps = 14/107 (13%)

Query: 93  WRFEQPTRVRPE----------CVSPGCFPSP---LLKRKDSKRRTVQLPESETDY-TSD 138
           W+  +P R+RPE              GCFPSP   L K K    R      SE DY  SD
Sbjct: 126 WQLHRPNRIRPESEPEPSSDFSVAGFGCFPSPKFRLRKVKSGGSRRKSGSRSENDYYCSD 185

Query: 139 LETLARWSLSSRKXXXXXXXXXXXXXXXXXXXXXXXXEAEWAGFGLF 185
           +ET++ W++SSR+                        EAEW GFGLF
Sbjct: 186 METMSPWTVSSRRSVSPRWESPKSSFSSLRFSPRFANEAEWVGFGLF 232