Jatropha Genome Database

JcCB0064191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.10 + phase: 1 /partial
         (205 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   238   2e-63
AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   237   3e-63
AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative ...    54   6e-08
AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative ...    50   8e-07

>AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968);
           ATP binding / ATPase/ DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr1:7615675-7618362 FORWARD
          Length = 339

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 136/157 (86%), Gaps = 2/157 (1%)

Query: 13  NY-GKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRR 71
           NY  +IIEPLASRCAKFRFKPLSE++MS+RIL+IC EEGL++D EALSTLSSISQGDLRR
Sbjct: 153 NYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRR 212

Query: 72  AITYLQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEVNNIIAEGY 131
           AITYLQ A RLFGSTI+S DL++VSGV+P E +   + ACKSGDFD+ANKEV+NI+AEGY
Sbjct: 213 AITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNIVAEGY 272

Query: 132 PVSQMLVQLFDLVVEAD-DISDEQKARICKSLAAADK 167
           P SQ++ QLFD+V EAD DI+D QKA+ICK LA  DK
Sbjct: 273 PASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309


>AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968);
           ATP binding / ATPase/ DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr1:7615675-7618362 FORWARD
          Length = 327

 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 136/157 (86%), Gaps = 2/157 (1%)

Query: 13  NY-GKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRR 71
           NY  +IIEPLASRCAKFRFKPLSE++MS+RIL+IC EEGL++D EALSTLSSISQGDLRR
Sbjct: 141 NYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRR 200

Query: 72  AITYLQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEVNNIIAEGY 131
           AITYLQ A RLFGSTI+S DL++VSGV+P E +   + ACKSGDFD+ANKEV+NI+AEGY
Sbjct: 201 AITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNIVAEGY 260

Query: 132 PVSQMLVQLFDLVVEAD-DISDEQKARICKSLAAADK 167
           P SQ++ QLFD+V EAD DI+D QKA+ICK LA  DK
Sbjct: 261 PASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 297


>AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative |
           chr1:29112194-29114323 REVERSE
          Length = 369

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query: 4   SAKFKESQDNYGKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSS 63
           S +F    ++  KII  L SRC +FRF PL    MS R+ ++ + E L +    L+ L  
Sbjct: 168 STRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCGLAALVR 227

Query: 64  ISQGDLRRAITYLQ 77
           +S GD+R+A+  LQ
Sbjct: 228 LSNGDMRKALNILQ 241


>AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative |
           chr1:23422068-23423771 REVERSE
          Length = 333

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 1/145 (0%)

Query: 4   SAKFKESQDNYGKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSS 63
           S +F  + +   KIIEP+ SRCA  RF  LS+  +  R+L +   E +    E L  +  
Sbjct: 143 STRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAIIF 202

Query: 64  ISQGDLRRAITYLQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEV 123
            + GD+R+A+  LQ     F S ++ +++  V        +           FD+A   +
Sbjct: 203 TADGDMRQALNNLQATFSGF-SFVNQENVFKVCDQPHPLHVKNIVRNVLESKFDIACDGL 261

Query: 124 NNIIAEGYPVSQMLVQLFDLVVEAD 148
             +   GY  + ++  LF ++   D
Sbjct: 262 KQLYDLGYSPTDIITTLFRIIKNYD 286