Jatropha Genome Database

JcCB0063711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0063711.10 - phase: 2 /partial
         (394 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20170.1 | Symbols:  | unknown protein | chr5:6807554-6810729...   410   e-115

>AT5G20170.1 | Symbols:  | unknown protein | chr5:6807554-6810729
           REVERSE
          Length = 653

 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/369 (56%), Positives = 271/369 (73%), Gaps = 19/369 (5%)

Query: 26  QVFDMVNREAFNQSLGVNVTGIQENYLQLSISTGTSVFLSLVPSVEDEQTADGGGHQISE 85
           Q+FDM+NREAFN+ +G N++G++EN++++SI  G S+F+SL PS ++         + SE
Sbjct: 294 QLFDMLNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSI------KKSE 347

Query: 86  TAVLPLDSIDEVKLPEEKHVYLHKKSRFPNRISCEIYLQQIFHEHVFLKAKDRPLPTGTR 145
           +A L ++S   V+ P E   Y  KK  FPNR S EIYLQQIFHEH F KAKD+      R
Sbjct: 348 SATLLIESSGRVE-PAEGGDYRLKKLGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIR 406

Query: 146 VSSQLK--DGSGLLGHFCMTVAHRIFSNKVLMELENVICKVPYLHLISHPTWHSRTSSWT 203
            S+Q +    SGLL HFC+++ HRIFSN+VL+ LE+V+CKVPYLHLISHPTW+SRTSSWT
Sbjct: 407 ASNQTEKDSNSGLLDHFCLSLTHRIFSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWT 466

Query: 204 IFMKVPQSIL-HASSHSQTSDMKSMKSDIKTEFRTKVVVNDDSINVEAEGAPNVVGLFKG 262
           +FM VP SI+    S +Q+ D K    ++KT+FRTKVVV DD I+VEAE  PNVVGL K 
Sbjct: 467 VFMTVPPSIIPQGRSETQSPDGKR---NLKTQFRTKVVVKDDCISVEAECTPNVVGLLKS 523

Query: 263 SSDDTCSMNKYDCDLADLPAIILQQVASQVIRWLHEEALTVGIKANRDFLSLSFELDQGE 322
           SS +  S+NKY+CD+ADLP +ILQQVASQ++ WL EEA TVG KA+R+FLSLS E+ +GE
Sbjct: 524 SSCNLFSINKYECDVADLPVMILQQVASQIVCWLLEEARTVGTKASREFLSLSLEIVEGE 583

Query: 323 VLSMVAHVDPEDVEGCISWWLVMEDGFAEKKLHMDIADDASECRKFLGYLPLDVLYSTLM 382
            +S+VAHV+PED +GCISWWLVME+G  E++      +  SE RK LG+L LDVLYS LM
Sbjct: 584 RVSLVAHVNPEDAKGCISWWLVMENGCTEER------EGVSESRKLLGHLSLDVLYSVLM 637

Query: 383 DLVTLCSGG 391
           DL+ LC  G
Sbjct: 638 DLINLCGTG 646