Jatropha Genome Database

JcCB0061481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061481.10 - phase: 2 /partial
         (117 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49530.1 | Symbols:  | SIN-like family protein | chr5:2010093...   117   2e-27

>AT5G49530.1 | Symbols:  | SIN-like family protein |
           chr5:20100934-20104242 FORWARD
          Length = 689

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 75/111 (67%)

Query: 1   FELIRQGLRDLAVSQSTLPKADPRIAKLAADGADAPLEELQEIISEVATNIHGSYVLKSS 60
           +E I QGLRDLAVS S  PKAD  +A   A   DA   EL+++I+ VATNIHGSYV  SS
Sbjct: 561 YETICQGLRDLAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVSISS 620

Query: 61  PDHPQYDVLRKVVIDLLLARGPNAKLKKSEVYEAAKLVLKRDINTTEYTKV 111
           PDHP+YD LR+VVI LL    P  KL K+EV+ A +  L+R+I   EY KV
Sbjct: 621 PDHPEYDSLREVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKV 671