Jatropha Genome Database

JcCB0061321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061321.10 + phase: 0 /pseudo/partial
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52590.1 | Symbols: UBQ1, EMB2167, ERD16, HAP4 | UBQ1 (UBIQUI...    62   6e-11
AT2G36170.1 | Symbols:  | ubiquitin extension protein 2 (UBQ2) /...    62   6e-11

>AT3G52590.1 | Symbols: UBQ1, EMB2167, ERD16, HAP4 | UBQ1 (UBIQUITIN
           EXTENSION PROTEIN 1); protein binding / structural
           constituent of ribosome | chr3:19505668-19506681 FORWARD
          Length = 128

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 39  NLCLVLSLREGIVNHLSWLWLANIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSKR 97
            L LVL LR GI+     +      +DKMICRKC +R+HP AVNC KKKCGHS+  R K+
Sbjct: 66  TLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKK 125

Query: 98  K 98
           K
Sbjct: 126 K 126


>AT2G36170.1 | Symbols:  | ubiquitin extension protein 2 (UBQ2) /
           60S ribosomal protein L40 (RPL40A) |
           chr2:15172153-15173046 FORWARD
          Length = 128

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 39  NLCLVLSLREGIVNHLSWLWLANIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSKR 97
            L LVL LR GI+     +      +DKMICRKC +R+HP AVNC KKKCGHS+  R K+
Sbjct: 66  TLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKK 125

Query: 98  K 98
           K
Sbjct: 126 K 126