Jatropha Genome Database

JcCB0060901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060901.10 + phase: 0 /partial
         (290 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21530.1 | Symbols:  | nucleotide binding | chr4:11450743-114...   438   e-123

>AT4G21530.1 | Symbols:  | nucleotide binding |
           chr4:11450743-11455862 FORWARD
          Length = 777

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/290 (72%), Positives = 248/290 (85%)

Query: 1   MNASSCKVALSKDLRHMIVMCSGELNDNMVGSRENQMAGDVMHGSHGLVLDTSIFSKRKS 60
            NAS  KVALSKDL  ++VMC+GEL D  +  RE ++    + G H L +DTSIF KRK 
Sbjct: 223 FNASIYKVALSKDLCRLVVMCTGELKDCDIKPREEKINVQDLPGLHCLAMDTSIFWKRKY 282

Query: 61  ELHQLAQQASNIEELTEVIRASLSVMSTQWSDAMRVFHEKFDSLSNLIVDHALDSSPQEE 120
           ELHQ+AQQASNIE+LTEVIRASLSVM+ QW+DAM+ FHEKF SLS LI+D+ L+SSPQEE
Sbjct: 283 ELHQVAQQASNIEDLTEVIRASLSVMNKQWADAMKTFHEKFHSLSTLIIDNGLESSPQEE 342

Query: 121 FLSLLGGARTSPAVHQFLVNTLGEVGVKRVSKVVCGAGKELQRIVLDHIQPAAEIIAFRM 180
           FLSLLGGAR SPA++QFLVN+LGEVGVKRV K VCG GKELQ++VLDH+QPAAEII FR+
Sbjct: 343 FLSLLGGARISPALNQFLVNSLGEVGVKRVLKSVCGTGKELQQVVLDHLQPAAEIIGFRI 402

Query: 181 GELRGLSRWRARYQGIGLDEMLINNATEKSGMMLVQIERFMRVLSSVEQQFSNFFNWLLK 240
           GELRGLSRWRARYQGIGLDEML+N ATE +G++LVQ++RFM VLSSV QQFSNFFNWL++
Sbjct: 403 GELRGLSRWRARYQGIGLDEMLLNEATENTGLLLVQVQRFMMVLSSVVQQFSNFFNWLVR 462

Query: 241 CIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLELSEVSHNIEVD 290
            IK LMQEP+DQLL YNSEL+V+FLKFLYDQDPV+ LLELSE   +IE+D
Sbjct: 463 SIKYLMQEPNDQLLSYNSELLVVFLKFLYDQDPVKDLLELSEAGDDIEID 512