Jatropha Genome Database

JcCB0060791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060791.20 - phase: 2 /pseudo/partial
         (94 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49510.1 | Symbols: emb1273 | emb1273 (embryo defective 1273)...   108   9e-25

>AT1G49510.1 | Symbols: emb1273 | emb1273 (embryo defective 1273) |
           chr1:18327026-18328147 FORWARD
          Length = 240

 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 57/73 (78%)

Query: 13  MKDAEVPWHLIAIAIFFTLIKLPGPCYPYWGRIFVPHIANGVLWRTLWSAFLWFRRPRKG 72
           +K+AEVPWHLIA+ +FFTLIKLPGP YPYWGR+ VPH ANGVL R LWS F W+++ R  
Sbjct: 168 LKEAEVPWHLIAMMMFFTLIKLPGPYYPYWGRLLVPHFANGVLLRALWSMFFWYKKTRNT 227

Query: 73  SGAVLQQNSADSS 85
           SG  LQ +S ++ 
Sbjct: 228 SGNPLQNHSLETE 240