Jatropha Genome Database

JcCB0060791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060791.10 - phase: 0 /partial
         (222 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25970.1 | Symbols:  | KH domain-containing protein | chr2:11...   182   1e-46
AT4G10070.1 | Symbols:  | KH domain-containing protein | chr4:62...   149   1e-36
AT1G33680.1 | Symbols:  | RNA binding / nucleic acid binding | c...   135   3e-32
AT5G04430.2 | Symbols: BTR1, BTR1L | BTR1L (BINDING TO TOMV RNA ...    64   5e-11
AT5G04430.1 | Symbols: BTR1, BTR1S | BTR1L (BINDING TO TOMV RNA ...    64   6e-11
AT1G14170.3 | Symbols:  | KH domain-containing protein | chr1:48...    48   6e-06
AT1G14170.1 | Symbols:  | KH domain-containing protein | chr1:48...    48   6e-06
AT1G14170.2 | Symbols:  | KH domain-containing protein | chr1:48...    47   9e-06

>AT2G25970.1 | Symbols:  | KH domain-containing protein |
           chr2:11071844-11075604 REVERSE
          Length = 632

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 133/208 (63%), Gaps = 6/208 (2%)

Query: 20  KLDAFELAKQRAQEIASRIANDADQKRPRL---VXXXXXXXXXXXXXXXXXXXXXXXXXX 76
            +D  ++AKQ+AQEIA+R+ N AD KRPR+                              
Sbjct: 63  PMDEIQIAKQKAQEIAARLLNSADAKRPRVDNGASYDYGDNKGFSSYPSEGKQMSGTVPS 122

Query: 77  XXXLYHGS-QGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTR 135
              + +GS QG +KKI IPN +VGV+IG+GGETIKY+Q+QSGAKIQ+T+D DADP+  TR
Sbjct: 123 SIPVSYGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATR 182

Query: 136 DVELMGSSDQISRAEELINDVI--AETDAGGSASSAVHGLDTKQTGGEQFAMKVPNDKVG 193
            V+L G+ DQIS+AE+LI DV+  AE      +          Q G +QF MK+PN+KVG
Sbjct: 183 TVDLTGTPDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVG 242

Query: 194 LLIGKSGDTIKYMQNRSGARMQIIPLHL 221
           L+IGK G+TIK MQ ++GAR+Q+IPLHL
Sbjct: 243 LIIGKGGETIKSMQAKTGARIQVIPLHL 270



 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 91  ITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQ--DADPHSLTRDVELMGSSDQISR 148
           + IPN KVG++IG+GGETIK +Q ++GA+IQ+        DP +  R +++ G ++QI  
Sbjct: 234 MKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDP-TPERTLQIDGITEQIEH 292

Query: 149 AEELINDVIA 158
           A++L+N++I+
Sbjct: 293 AKQLVNEIIS 302


>AT4G10070.1 | Symbols:  | KH domain-containing protein |
           chr4:6295608-6299759 REVERSE
          Length = 725

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 101/140 (72%), Gaps = 2/140 (1%)

Query: 83  GSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGS 142
           G+Q  +++I +P+ KVGV+IG+GGETI+Y+Q  SGAKIQI +D +ADP S  R VE++GS
Sbjct: 172 GTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGS 231

Query: 143 SDQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGG--EQFAMKVPNDKVGLLIGKSG 200
              I  AE+LI+ VIAE +AGGS +    G  +    G  EQ  +KVPNDKVGL+IG+ G
Sbjct: 232 VACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGG 291

Query: 201 DTIKYMQNRSGARMQIIPLH 220
           +TIK MQ RSGAR Q+IP H
Sbjct: 292 ETIKNMQTRSGARTQLIPQH 311



 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSL-TRDVELMGSSDQISR 148
           +I +PN KVG++IGRGGETIK +Q +SGA+ Q+   Q A+   L  R V + G   QI  
Sbjct: 275 EIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIP-QHAEGDGLKERTVRISGDKMQIDI 333

Query: 149 AEELINDVI 157
           A ++I DV+
Sbjct: 334 ATDMIKDVM 342


>AT1G33680.1 | Symbols:  | RNA binding / nucleic acid binding |
           chr1:12204056-12208282 FORWARD
          Length = 763

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 98/135 (72%), Gaps = 6/135 (4%)

Query: 84  SQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSS 143
           +Q  +++I +P+ KVG +IG+GGE ++Y+QV SGAKIQI +D +ADP S  R VE++G+ 
Sbjct: 229 TQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTV 288

Query: 144 DQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFAMKVPNDKVGLLIGKSGDTI 203
             I +AE+LIN VIAE +AGG  + A  G+       EQ  +KVP+DKVG++IG+ G+TI
Sbjct: 289 SCIEKAEKLINAVIAEVEAGGVPALAARGVP------EQMEIKVPSDKVGVIIGRGGETI 342

Query: 204 KYMQNRSGARMQIIP 218
           K MQ +S AR+Q+IP
Sbjct: 343 KNMQTKSRARIQLIP 357



 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           +I +P+ KVGV+IGRGGETIK +Q +S A+IQ+    + D  S  R V + G   QI  A
Sbjct: 323 EIKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQNEGD-ASKERTVRISGDKRQIDIA 381

Query: 150 EELINDVI 157
             LI DV+
Sbjct: 382 TALIKDVM 389


>AT5G04430.2 | Symbols: BTR1, BTR1L | BTR1L (BINDING TO TOMV RNA 1L
           (LONG FORM)); nucleic acid binding |
           chr5:1250602-1253523 REVERSE
          Length = 334

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           +  + N   G VIG+GG TI   Q +SGA+IQ++++Q+  P +  R + + GS  ++   
Sbjct: 38  RFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNG 97

Query: 150 EELINDVIAETDAGGSASSAVHGLDTKQTGG-EQFAMKVPNDKVGLLIGKSGDTIKYMQN 208
            ELI D +          S +H  D  +     +  + VPN   G +IGK G TIK    
Sbjct: 98  LELILDKL---------HSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIE 148

Query: 209 RSGARMQIIPL 219
            S A ++I PL
Sbjct: 149 ESKAGIKISPL 159


>AT5G04430.1 | Symbols: BTR1, BTR1S | BTR1L (BINDING TO TOMV RNA 1L
           (LONG FORM)); nucleic acid binding / single-stranded RNA
           binding | chr5:1250602-1253523 REVERSE
          Length = 313

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           +  + N   G VIG+GG TI   Q +SGA+IQ++++Q+  P +  R + + GS  ++   
Sbjct: 38  RFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNG 97

Query: 150 EELINDVIAETDAGGSASSAVHGLDTKQTGG-EQFAMKVPNDKVGLLIGKSGDTIKYMQN 208
            ELI D +          S +H  D  +     +  + VPN   G +IGK G TIK    
Sbjct: 98  LELILDKL---------HSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIE 148

Query: 209 RSGARMQIIPL 219
            S A ++I PL
Sbjct: 149 ESKAGIKISPL 159


>AT1G14170.3 | Symbols:  | KH domain-containing protein |
           chr1:4843463-4845253 REVERSE
          Length = 479

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 83  GSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGS 142
            S+    +   P  K G +IG+GGE  K I+ ++ + ++I    +A P    R V +  +
Sbjct: 40  ASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRI---NEALPGCEERVVTMYST 96

Query: 143 SDQISR-------------AEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFAMKVPN 189
           +++++              A   ++D++         +   + L  KQT   +  M VP+
Sbjct: 97  NEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVR--MLVPS 154

Query: 190 DKVGLLIGKSGDTIKYMQNRSGARMQIIPLHL 221
           D++G +IGK G  I+ ++N + A++++I  HL
Sbjct: 155 DQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHL 186


>AT1G14170.1 | Symbols:  | KH domain-containing protein |
           chr1:4843463-4845253 REVERSE
          Length = 454

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 83  GSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGS 142
            S+    +   P  K G +IG+GGE  K I+ ++ + ++I    +A P    R V +  +
Sbjct: 15  ASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRI---NEALPGCEERVVTMYST 71

Query: 143 SDQISR-------------AEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFAMKVPN 189
           +++++              A   ++D++         +   + L  KQT   +  M VP+
Sbjct: 72  NEELNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVR--MLVPS 129

Query: 190 DKVGLLIGKSGDTIKYMQNRSGARMQIIPLHL 221
           D++G +IGK G  I+ ++N + A++++I  HL
Sbjct: 130 DQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHL 161


>AT1G14170.2 | Symbols:  | KH domain-containing protein |
           chr1:4843463-4845253 REVERSE
          Length = 446

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 18/145 (12%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISR- 148
           +   P  K G +IG+GGE  K I+ ++ + ++I    +A P    R V +  ++++++  
Sbjct: 14  RYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRI---NEALPGCEERVVTMYSTNEELNHF 70

Query: 149 ------------AEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFAMKVPNDKVGLLI 196
                       A   ++D++         +   + L  KQT   +  M VP+D++G +I
Sbjct: 71  GDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVR--MLVPSDQIGCVI 128

Query: 197 GKSGDTIKYMQNRSGARMQIIPLHL 221
           GK G  I+ ++N + A++++I  HL
Sbjct: 129 GKGGQVIQNLRNDTNAQIRVIKDHL 153