Jatropha Genome Database

JcCB0059761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059761.10 - phase: 0 
         (411 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47960.1 | Symbols:  | unknown protein | chr2:19625631-196288...   544   e-155

>AT2G47960.1 | Symbols:  | unknown protein | chr2:19625631-19628869
           FORWARD
          Length = 442

 Score =  544 bits (1401), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/434 (63%), Positives = 326/434 (75%), Gaps = 32/434 (7%)

Query: 4   TQGTHSLAFRVMRLCKPSFHVDAPLRVDPADLIVGEDIFDDPIAASRLPPLIDGQVSNLT 63
           T G HSLAFRVMRLCKPSFHVD PLR+DP DL+ GED  DDP +AS    L    VS+  
Sbjct: 8   THGPHSLAFRVMRLCKPSFHVDPPLRIDPFDLLAGEDFSDDPSSAS----LFRRHVSSAD 63

Query: 64  DT-SDLTYRTRFLLQHPSDSFGLTGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRDVI 122
              SDL+YR RFLL HP+D  GL+GLL+LPQ+FGAIYLGETFCSYIS+NNSS  EVRDV 
Sbjct: 64  AVDSDLSYRNRFLLNHPTDPIGLSGLLLLPQSFGAIYLGETFCSYISVNNSSTSEVRDVT 123

Query: 123 IKAEIQTERQRILLLDTSKTPVETIRAGGRYDFIVEHDVKELGAHTLVCTALYNDGDGER 182
           IKAEIQTERQRILLLDTSK+PVE+IR GGRYDFIVEHDVKELGAHTLVC+ALYND DGER
Sbjct: 124 IKAEIQTERQRILLLDTSKSPVESIRTGGRYDFIVEHDVKELGAHTLVCSALYNDADGER 183

Query: 183 KYLPQFFKFIVANPLSVRT-----KETTYLEACIENHTKTSLYMDQVEFEPAQYWNAQIL 237
           KYLPQFFKF+VANPLSVRT     KETT+LEACIENHTK +L+MDQV+FEPA+ W+A  L
Sbjct: 184 KYLPQFFKFVVANPLSVRTKVRVVKETTFLEACIENHTKANLFMDQVDFEPAKQWSAVRL 243

Query: 238 KADDNQSEKDSHTRETF--KTPILIRSGGGIRNYLYQLRFSSNGSAQ-----SNVLGKLQ 290
           + +D+  +  +        K P++IRSGGGI NYLY+L  S++ S Q     SN+LGK Q
Sbjct: 244 QNEDSTEDPPTSGLSGLIPKPPVIIRSGGGIHNYLYKLNPSADVSGQTKFQGSNILGKFQ 303

Query: 291 ITWRTNLGEPGRLQTQQILGNPITQKXXXXXXXXXXXXINLDKPFSVHLKLKNHTERELG 350
           ITWRTNLGEPGRLQTQQILG P+++K            I+L++PF  +L L N T+R+LG
Sbjct: 304 ITWRTNLGEPGRLQTQQILGAPVSRKEINMRVVEVPAVIHLNRPFRAYLNLTNQTDRQLG 363

Query: 351 PFEVWLSQNDSLDEKAVMINGLQS---------------LNLIAIKLGVQKITGITVFDK 395
           PFEV LSQ+++  EK V INGLQ+               LNLIA KLGVQKI GIT  D 
Sbjct: 364 PFEVSLSQDETQLEKPVGINGLQTLMLPRIEAFGSNDFQLNLIASKLGVQKIAGITALDT 423

Query: 396 KEKKTYDPLPDLEV 409
           +EKKTY+ +PD+E+
Sbjct: 424 REKKTYELVPDMEI 437