Jatropha Genome Database

JcCB0059061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059061.10 + phase: 0 /partial
         (246 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROT...   259   8e-70

>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN
            HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding
            / mismatched DNA binding / nuclease |
            chr3:8823229-8829571 REVERSE
          Length = 1118

 Score =  259 bits (663), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 129/245 (52%), Positives = 170/245 (69%), Gaps = 30/245 (12%)

Query: 1    MGTEYVNGQTKPTWRLIDGICKESLAFETAKKEGIPETIVQRAEELYFSAYAKKVSPERI 60
            MG E V GQTKPTW+L DG+C+ESLAFETAK+EG+PE+++QRAE LY S YAK  S E +
Sbjct: 900  MGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQRAEALYLSVYAKDASAEVV 959

Query: 61   EERKRPIHSSGTVNGSNEAHFALTEATARALHHDTKSAKEMEVMQKKDVESAVTLICQRK 120
            +  +        +  SN           + +     S + +E    KD+  A+  IC +K
Sbjct: 960  KPDQ-------IITSSN---------NDQQIQKPVSSERSLE----KDLAKAIVKICGKK 999

Query: 121  LIELYKQKNTAELETVQCVAIGAREQPPPSTIGASCVYIMFRPDKRLYVGVTDDLEGRVH 180
            +IE          E ++C++IGARE PPPST+G+SCVY+M RPDKRLY+G TDDLEGR+ 
Sbjct: 1000 MIEP---------EAIECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIR 1050

Query: 181  AHRSKEGMYNASFLYFIVKGKSIACQLETLLINQLPRKGFQLSNIADGKHRNFGTSNLSL 240
            AHR+KEG+  +SFLY +V+GKS+ACQLETLLINQL  +G+ L+N+ADGKHRNFGTS+ SL
Sbjct: 1051 AHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS-SL 1109

Query: 241  ETTPV 245
             T+ V
Sbjct: 1110 STSDV 1114