Jatropha Genome Database

JcCB0058681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058681.20 + phase: 0 /TE/partial
         (85 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1 | Symbols: ORF120 | hypothetical protein | chrM:2075...    55   8e-09

>ATMG00710.1 | Symbols: ORF120 | hypothetical protein |
          chrM:207553-207915 REVERSE
          Length = 120

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 6  RCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGCICH 65
          R +L E  +PK F  +AA  AVHI+N+  + A+    P+E W    P   Y R FGC+ +
Sbjct: 10 RSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAY 69

Query: 66 VHIPDAR 72
          +H  + +
Sbjct: 70 IHCDEGK 76