Jatropha Genome Database
- JcCB0058681.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0058681.10 + phase: 0
(367 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type) f... 345 4e-95
AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type) f... 286 1e-77
AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 249 2e-66
AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcript... 213 2e-55
AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3); pr... 174 6e-44
AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1); tr... 139 4e-33
AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 131 9e-31
AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); transcription fac... 129 2e-30
AT2G33500.1 | Symbols: | zinc finger (B-box type) family protei... 82 5e-16
AT2G33500.2 | Symbols: | zinc finger (B-box type) family protei... 82 5e-16
AT1G06040.1 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /... 81 1e-15
AT1G75540.1 | Symbols: STH2 | STH2 (SALT TOLERANCE HOMOLOG2); tr... 81 1e-15
AT1G78600.1 | Symbols: LZF1, STH3 | LZF1 (LIGHT-REGULATED ZINC F... 80 2e-15
AT2G47890.1 | Symbols: | zinc finger (B-box type) family protei... 80 2e-15
AT1G28050.1 | Symbols: | zinc finger (B-box type) family protei... 80 2e-15
AT2G47890.2 | Symbols: | zinc finger (B-box type) family protei... 80 3e-15
AT2G21320.1 | Symbols: | zinc finger (B-box type) family protei... 79 4e-15
AT1G06040.2 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /... 79 4e-15
AT4G38960.1 | Symbols: | zinc finger (B-box type) family protei... 77 2e-14
AT2G31380.1 | Symbols: STH | STH; protein domain specific bindin... 77 2e-14
AT4G15250.1 | Symbols: | zinc finger (B-box type) family protei... 76 4e-14
AT5G48250.1 | Symbols: | zinc finger (B-box type) family protei... 73 3e-13
AT1G68190.1 | Symbols: | zinc finger (B-box type) family protei... 72 6e-13
AT3G21880.1 | Symbols: | zinc finger (B-box type) family protei... 71 1e-12
AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 70 2e-12
AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 70 2e-12
AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 70 2e-12
AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9); transcript... 70 2e-12
AT1G73870.1 | Symbols: | zinc finger (B-box type) family protei... 69 5e-12
AT4G39070.1 | Symbols: | zinc finger (B-box type) family protei... 66 4e-11
AT1G49130.1 | Symbols: | zinc finger (B-box type) family protei... 65 6e-11
AT1G49130.2 | Symbols: | zinc finger (B-box type) family protei... 65 6e-11
AT1G68520.1 | Symbols: | zinc finger (B-box type) family protei... 65 8e-11
AT4G10240.1 | Symbols: | zinc finger (B-box type) family protei... 64 1e-10
AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS... 64 2e-10
AT1G25440.1 | Symbols: | zinc finger (B-box type) family protei... 63 3e-10
AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE 63 3e-10
AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 62 5e-10
AT1G07050.1 | Symbols: | CONSTANS-like protein-related | chr1:2... 59 4e-09
AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 59 5e-09
AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE REGUL... 59 5e-09
AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknow... 58 8e-09
AT1G04500.1 | Symbols: | zinc finger CONSTANS-related | chr1:12... 58 1e-08
AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 1e-08
AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 1e-08
AT4G27900.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 2e-08
AT4G27900.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 2e-08
AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-R... 57 2e-08
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 55 6e-08
AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB E... 55 6e-08
AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSE... 54 1e-07
AT4G27310.1 | Symbols: | zinc finger (B-box type) family protei... 54 2e-07
AT3G21890.1 | Symbols: | zinc finger (B-box type) family protei... 54 2e-07
AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS PSEUDO-R... 54 2e-07
AT5G57180.1 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS... 54 2e-07
AT5G53420.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 53 2e-07
AT2G46670.1 | Symbols: | pseudo-response regulator, putative / ... 53 3e-07
AT4G25990.2 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE 53 3e-07
AT5G53420.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 53 4e-07
AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2)... 52 6e-07
AT5G54470.1 | Symbols: | zinc finger (B-box type) family protei... 51 9e-07
AT5G59990.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 51 1e-06
>AT5G57660.1 | Symbols: ATCOL5, COL5 | zinc finger (B-box type)
family protein | chr5:23355573-23356729 FORWARD
Length = 355
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 193/380 (50%), Positives = 234/380 (61%), Gaps = 38/380 (10%)
Query: 1 MGIELETLKSLAGGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRH 60
MG LE++KS++GGW + +AR CD+CK+ AA FCR DSA+LC+ CD++IH +RH
Sbjct: 1 MGFGLESIKSISGGWGA-AARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS----FTRH 55
Query: 61 ERVWMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPFFDSADSIV- 119
ERVW+CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHERVPVE FFDSA++ V
Sbjct: 56 ERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVA 115
Query: 120 ---KSSPFNFLVGGSAAGYHHHQQQEDDMDSVSWXX-XXXXXXXXXXXGIENPEMK-SSD 174
SS F L + DD+ W G EN MK SSD
Sbjct: 116 KISASSTFGILGSSTTVDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTEN--MKGSSD 173
Query: 175 LFFPVMDPFLDMDFHQ--NHH--TAATDSVVPVQTKPSPMPIINNEICYDVDFCRSKLSS 230
F D +D +F NHH A DS+VPVQTK P+P+ NN+ C+D+DFCRSKLS+
Sbjct: 174 FMFSDFDRLIDFEFPNSFNHHQNNAGGDSLVPVQTKTEPLPLTNNDHCFDIDFCRSKLSA 233
Query: 231 LNYPTQXXXXXXXXXXXXXXXXPDGNSMSDISYPFGQNINNSAGPNVXXXXXXXXXXXXP 290
YP+Q PDGN+ NNS +
Sbjct: 234 FTYPSQSVSHSVSTSSIEYGVVPDGNT------------NNSVNRSTITSSTTGGDHQAS 281
Query: 291 GIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESD---MNHLY 347
+DREARVLRYREKRKNRKFEKTIRYASRKAYAE+RPRIKGRFAKRTE E+D ++H+Y
Sbjct: 282 SMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDDIFLSHVY 341
Query: 348 GSPSSVGFISDSRYGVVPSF 367
S + ++YGVVP+F
Sbjct: 342 ASAAH------AQYGVVPTF 355
>AT5G24930.1 | Symbols: ATCOL4, COL4 | zinc finger (B-box type)
family protein | chr5:8589325-8590949 FORWARD
Length = 406
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 173/381 (45%), Positives = 227/381 (59%), Gaps = 50/381 (13%)
Query: 18 VSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVT 77
++++ CDSCK+A AA +CR D+A+LCL+CDSK+H ANKL SRH RVWMCEVCEQAPA VT
Sbjct: 45 MASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVT 104
Query: 78 CKADAAALCVTCDDDIHSANPLARRHERVPVEPFFD--SADSIVKSSPFNFL-------V 128
CKADAAALCVTCD DIHSANPLARRHERVPV PF+D S+D VK + NFL +
Sbjct: 105 CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDI 164
Query: 129 GGSAAGYHHHQQQEDDMDSVSWXXX-XXXXXXXXXXGI-----------ENPEMKSSDLF 176
G+ + ++E++ ++ SW GI ++PEM + +
Sbjct: 165 DGNGS------REEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQQY 218
Query: 177 -FPVMDPFLDMDFHQ--------NHHTAATDSVVPVQTKPSPMPIINNEICYDVDFC-RS 226
F DP+LD+D+ +++ TD VVPV+ + +P + NE C+++DF S
Sbjct: 219 LFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTV-NENCFEMDFTGGS 277
Query: 227 KLSSLNYPTQXXXXXXXXXXXXXXXXPDGNSMSDISYPFGQNINNSAGPNVXXXXXXXXX 286
K + PDG S++D+SYP+G + A P
Sbjct: 278 KGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGADPGTQRAVPLTSA 337
Query: 287 XXXPGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHL 346
+REARV+RYREKRKNRKFEKTIRYASRKAYAE RPRIKGRFAKRT+ ++ N +
Sbjct: 338 ------EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDT-NESNDV 390
Query: 347 YGSPSSVGFISDSRYGVVPSF 367
G G I S +G+VP+F
Sbjct: 391 VGH----GGIF-SGFGLVPTF 406
>AT2G24790.1 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567946 FORWARD
Length = 294
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/324 (47%), Positives = 181/324 (55%), Gaps = 58/324 (17%)
Query: 19 SARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTC 78
S+R CDSCK+ A FCRAD+A+LC +CD KIH ANKL SRHERVW+CEVCEQAPA VTC
Sbjct: 4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTC 63
Query: 79 KADAAALCVTCDDDIHSANPLARRHERVPVEPFFDSAD-SIVKSSPFNFLVGGSAAGYHH 137
KADAAALCVTCD DIHSANPL+RRHERVP+ PF+D+ + SS NF+
Sbjct: 64 KADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---------- 113
Query: 138 HQQQEDDMD-SVSWXXXXXXXXXXXXXGIENPEMKSSDLFFPVMDPFLDMDFHQNHHTAA 196
ED D + SW GIE + SDL +P ++ +++
Sbjct: 114 ---DEDGGDVTASW--------LLAKEGIEITNL-FSDLDYP------KIEVTSEENSSG 155
Query: 197 TDSVVPVQTKPSPMPIINNEICYDVDFCRSKLSS--LNYPTQXXXXXXXXXXXXXXXXPD 254
D VVPVQ K + NE ++ D SK+S N+ Q
Sbjct: 156 NDGVVPVQNK-----LFLNEDYFNFDLSASKISQQGFNFINQTV---------------- 194
Query: 255 GNSMSDISYPFGQNINNSAGPNVXXXXXXXXXXXXPGIDREARVLRYREKRKNRKFEKTI 314
S I P + S G +REARVLRYREKRKNRKFEKTI
Sbjct: 195 --STRTIDVPL---VPESGGVTAEMTNTETPAVQLSPAEREARVLRYREKRKNRKFEKTI 249
Query: 315 RYASRKAYAETRPRIKGRFAKRTE 338
RYASRKAYAE RPRIKGRFAKRT+
Sbjct: 250 RYASRKAYAEMRPRIKGRFAKRTD 273
>AT3G02380.1 | Symbols: COL2 | COL2 (constans-like 2); transcription
factor/ zinc ion binding | chr3:487438-488624 REVERSE
Length = 347
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 192/369 (52%), Gaps = 43/369 (11%)
Query: 12 AGGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQ 71
+G W AR CD+C++A +C ADSAYLC CD+++H AN++ SRHERV +C+ CE
Sbjct: 9 SGTW----ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCES 64
Query: 72 APAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPFFDSADSIVKSSPFNFLVGGS 131
APAA CKADAA+LC CD +IHSANPLARRH+RVP+ P SA+S +P
Sbjct: 65 APAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPL--SANSCSSMAP-------- 114
Query: 132 AAGYHHHQQQEDDMDSVSWXXXXXXXXXXXXXGIENPEMKSSDLFFPVMDPFLDMD--FH 189
EDD + SW G +N + ++D MD F
Sbjct: 115 --SETDADNDEDDREVASW----LLPNPGKNIGNQNNGFLFGVEYLDLVDYSSSMDNQFE 168
Query: 190 QNHHTA-----ATDSVVPVQTKPSPMPIINNEICYD--VDFCRSKLSSLNYPTQXXXXXX 242
N +T D VVP+Q + S + ++ + +++ S + N +
Sbjct: 169 DNQYTHYQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHS 228
Query: 243 XXXXXXXXXXPDGNSMSDISYPF----GQNINNSAGPNVXXXXXXXXXXXXPGIDREARV 298
++ SDI+ + I+ +GP ++REARV
Sbjct: 229 ASVSSMDISVVPESTASDITVQHPRTTKETIDQLSGPPTQVVQQLTP------MEREARV 282
Query: 299 LRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHLYGSPSSVGFISD 358
LRYREK+K RKF+KTIRYASRKAYAE RPRIKGRFAKR E E++ ++ S +S+
Sbjct: 283 LRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIF----STSLMSE 338
Query: 359 SRYGVVPSF 367
+ YG+VPSF
Sbjct: 339 TGYGIVPSF 347
>AT2G24790.2 | Symbols: COL3, ATCOL3 | COL3 (CONSTANS-LIKE 3);
protein binding / transcription factor/ zinc ion binding
| chr2:10566959-10567621 FORWARD
Length = 220
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 128/217 (58%), Gaps = 35/217 (16%)
Query: 19 SARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTC 78
S+R CDSCK+ A FCRAD+A+LC +CD KIH ANKL SRHERVW+CEVCEQAPA VTC
Sbjct: 4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTC 63
Query: 79 KADAAALCVTCDDDIHSANPLARRHERVPVEPFFDSAD-SIVKSSPFNFLVGGSAAGYHH 137
KADAAALCVTCD DIHSANPL+RRHERVP+ PF+D+ + SS NF+
Sbjct: 64 KADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---------- 113
Query: 138 HQQQEDDMD-SVSWXXXXXXXXXXXXXGIENPEMKSSDLFFPVMDPFLDMDFHQNHHTAA 196
ED D + SW GIE + SDL +P ++ +++
Sbjct: 114 ---DEDGGDVTASW--------LLAKEGIEITNL-FSDLDYP------KIEVTSEENSSG 155
Query: 197 TDSVVPVQTKPSPMPIINNEICYDVDFCRSKLSSLNY 233
D VVPVQ K + NE ++ D SK+S +
Sbjct: 156 NDGVVPVQNK-----LFLNEDYFNFDLSASKISQQGF 187
>AT5G15850.1 | Symbols: COL1, ATCOL1 | COL1 (constans-like 1);
transcription factor/ zinc ion binding |
chr5:5176297-5177473 REVERSE
Length = 355
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 76/92 (82%)
Query: 20 ARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCK 79
A+ CD+C++A +CRADSAYLC +CD+++H AN+L SRHERV +C+ CE+APAA CK
Sbjct: 9 AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCK 68
Query: 80 ADAAALCVTCDDDIHSANPLARRHERVPVEPF 111
ADAA+LC TCD +IHSANPLARRH+RVP+ P
Sbjct: 69 ADAASLCTTCDSEIHSANPLARRHQRVPILPI 100
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHLYGSPSS 352
DREARVLRYREK+K RKFEKTIRYASRKAYAE RPRIKGRFAK+ +++ + N + S
Sbjct: 285 DREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAF----S 340
Query: 353 VGFISDSRYGVVPSF 367
D+ YG+VPSF
Sbjct: 341 TMITFDTGYGIVPSF 355
>AT5G15840.1 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171343-5172697 REVERSE
Length = 373
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 13 GGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQA 72
G + AR CD+C++ +C ADSAYLC++CD+++H AN++ SRH+RV +CE CE+A
Sbjct: 10 GSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERA 69
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPF 111
PAA C+AD A+LC CD ++HSANPLARRH+RVP+ P
Sbjct: 70 PAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPI 108
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 58/76 (76%), Gaps = 6/76 (7%)
Query: 292 IDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHLYGSPS 351
+DREARVLRYREKRK RKFEKTIRYASRKAYAE RPR+ GRFAKR EIE++
Sbjct: 304 MDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-EIEAEEQGF----- 357
Query: 352 SVGFISDSRYGVVPSF 367
+ + ++ YG+VPSF
Sbjct: 358 NTMLMYNTGYGIVPSF 373
>AT5G15840.2 | Symbols: CO, FG | CO (CONSTANS); transcription
factor/ transcription regulator/ zinc ion binding |
chr5:5171873-5172697 REVERSE
Length = 274
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 75/99 (75%)
Query: 13 GGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQA 72
G + AR CD+C++ +C ADSAYLC++CD+++H AN++ SRH+RV +CE CE+A
Sbjct: 10 GSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERA 69
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPF 111
PAA C+AD A+LC CD ++HSANPLARRH+RVP+ P
Sbjct: 70 PAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPI 108
>AT2G33500.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:14188159-14190046 REVERSE
Length = 402
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%)
Query: 13 GGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQA 72
G ++ S C+ C A FCRAD+A LCL CD +H AN L +H R +C+ C +
Sbjct: 2 GTSTTESVVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKE 61
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPF 111
P +V C D LC CD D+H + + HER VE F
Sbjct: 62 PVSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGF 100
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
+R+ + RY+EK+K R+++KTIRY +RKA AETR R+KGRF K T+
Sbjct: 356 NRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401
>AT2G33500.2 | Symbols: | zinc finger (B-box type) family protein |
chr2:14188159-14190046 REVERSE
Length = 401
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%)
Query: 13 GGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQA 72
G ++ S C+ C A FCRAD+A LCL CD +H AN L +H R +C+ C +
Sbjct: 2 GTSTTESVVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKE 61
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPF 111
P +V C D LC CD D+H + + HER VE F
Sbjct: 62 PVSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGF 100
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
+R+ + RY+EK+K R+++KTIRY +RKA AETR R+KGRF K T+
Sbjct: 355 NRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 400
>AT1G06040.1 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /
protein binding / transcription factor/ zinc ion binding
| chr1:1828662-1829659 REVERSE
Length = 248
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWM---------CEVCEQA 72
+CD C+ APA C AD A LC CD +IH ANKL S+H+R+ + C++C++
Sbjct: 4 QCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEK 63
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHER 105
A + C D A LC CD+ IH AN + H+R
Sbjct: 64 AAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 66 CEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPF---FDSADSIVKSS 122
C+VCE+APA V C AD AALC CD +IH+AN LA +H+R+ + F D + +
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKA 64
Query: 123 PFNFLVGGSA 132
F F V A
Sbjct: 65 AFIFCVEDRA 74
>AT1G75540.1 | Symbols: STH2 | STH2 (SALT TOLERANCE HOMOLOG2);
transcription factor/ zinc ion binding |
chr1:28366059-28367398 FORWARD
Length = 331
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 12/96 (12%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVW------------MCEVC 69
RCD C A+ FC AD A LC CD ++H ANKL S+H R +C++C
Sbjct: 4 RCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDIC 63
Query: 70 EQAPAAVTCKADAAALCVTCDDDIHSANPLARRHER 105
+ A + C+ D A LC CD IH+AN ++H+R
Sbjct: 64 QDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDR 99
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 16 SSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAA 75
S+ S+ CD C+ A FC+ D A LC +CDS IH AN+ +H+R + V A ++
Sbjct: 53 SNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSS 112
Query: 76 V 76
V
Sbjct: 113 V 113
>AT1G78600.1 | Symbols: LZF1, STH3 | LZF1 (LIGHT-REGULATED ZINC
FINGER PROTEIN 1); transcription factor/ zinc ion
binding | chr1:29567370-29568662 FORWARD
Length = 299
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWM---------CEVCEQA 72
+C+ C+ A A C AD A LC CD KIH ANKL +H+RV + C++C++A
Sbjct: 4 QCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEA 63
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPFFDSADSI-----VKSSPFN 125
C D A LC CD IH+ NP H+R + +SI KSSP N
Sbjct: 64 SGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPTN 121
>AT2G47890.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:19608245-19609476 FORWARD
Length = 332
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 21 RRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKA 80
R CD C ++ A +C+ADSA LCL CD ++H AN+L ++H R +C+ C ++P+++ C+
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70
Query: 81 DAAALCVTCDDDIHSANPLARRHERVPVEPF 111
+ + LC CD H+A+ + H R P E F
Sbjct: 71 ERSVLCQNCDWQHHTAS--SSLHSRRPFEGF 99
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 36/44 (81%)
Query: 292 IDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 335
++R + + RY+EK+K+R++EK IRY SRK AE+R RI+GRFAK
Sbjct: 285 LERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 60 HERVWMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHER 105
H+R +C+ C+ + A V CKAD+A LC+ CD +H AN L +H R
Sbjct: 7 HQRDRLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFR 52
>AT1G28050.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:9775768-9777657 REVERSE
Length = 433
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKADA 82
CD C A FCRAD+A LCL CD ++H AN L +H R +C+ C P +V C D
Sbjct: 9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68
Query: 83 AALCVTCDDDIHSANPLARRHERVPVEPF 111
LC CD D+H + ++ H R VE F
Sbjct: 69 LILCQECDWDVHGSCSVSDAHVRSAVEGF 97
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 300 RYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
RY+EKRK R+++KTIRY SRKA A+TR R++GRF K +E
Sbjct: 391 RYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASE 429
>AT2G47890.2 | Symbols: | zinc finger (B-box type) family protein |
chr2:19608245-19609036 FORWARD
Length = 237
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 21 RRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKA 80
R CD C ++ A +C+ADSA LCL CD ++H AN+L ++H R +C+ C ++P+++ C+
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCET 70
Query: 81 DAAALCVTCDDDIHSANPLARRHERVPVEPF 111
+ + LC CD H+A+ + H R P E F
Sbjct: 71 ERSVLCQNCDWQHHTAS--SSLHSRRPFEGF 99
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 60 HERVWMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHER 105
H+R +C+ C+ + A V CKAD+A LC+ CD +H AN L +H R
Sbjct: 7 HQRDRLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFR 52
>AT2G21320.1 | Symbols: | zinc finger (B-box type) family protein |
chr2:9126502-9127652 FORWARD
Length = 172
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 10/91 (10%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWM--------CEVCEQAPA 74
CD+C++A A FC AD A LC +CD K+H NKL SRH RV + C++CE APA
Sbjct: 5 CDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAPA 64
Query: 75 AVTCKADAAALCVTCDDDIHSANPLARRHER 105
C+ D ++LC+ CD +H R H R
Sbjct: 65 FFYCEIDGSSLCLQCDMVVHVGGK--RTHRR 93
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 65 MCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPV-EPFFDSADSIVKSSP 123
+C+ CE A A V C AD AALC +CD+ +H N LA RH RV + +P + I +++P
Sbjct: 4 LCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAP 63
Query: 124 FNF 126
F
Sbjct: 64 AFF 66
>AT1G06040.2 | Symbols: STO | STO (SALT TOLERANCE); DNA binding /
protein binding / transcription factor/ zinc ion binding
| chr1:1828957-1829659 REVERSE
Length = 177
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWM---------CEVCEQA 72
+CD C+ APA C AD A LC CD +IH ANKL S+H+R+ + C++C++
Sbjct: 4 QCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEK 63
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHER 105
A + C D A LC CD+ IH AN + H+R
Sbjct: 64 AAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 66 CEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPF---FDSADSIVKSS 122
C+VCE+APA V C AD AALC CD +IH+AN LA +H+R+ + F D + +
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKA 64
Query: 123 PFNFLVGGSA 132
F F V A
Sbjct: 65 AFIFCVEDRA 74
>AT4G38960.1 | Symbols: | zinc finger (B-box type) family protein
| chr4:18161576-18163045 FORWARD
Length = 183
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWM--------CEVCEQAPA 74
CD+C+ A A FC AD A LC CD K+H NKL SRH RV + C++CE APA
Sbjct: 5 CDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICENAPA 64
Query: 75 AVTCKADAAALCVTCDDDIH 94
C+ D ++LC+ CD +H
Sbjct: 65 FFYCEIDGSSLCLQCDMVVH 84
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 65 MCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPV-EPFFDSADSIVKSSP 123
+C+ CE A A + C AD AALC CD+ +H N LA RH RV + EP I +++P
Sbjct: 4 LCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICENAP 63
Query: 124 FNF 126
F
Sbjct: 64 AFF 66
>AT2G31380.1 | Symbols: STH | STH; protein domain specific binding /
transcription factor/ zinc ion binding |
chr2:13382150-13383302 FORWARD
Length = 238
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWM---------CEVCEQA 72
+CD C+ APA C AD A LC CD ++H ANKL S+H+R+++ C++C +
Sbjct: 4 QCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEK 63
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHER 105
A + C D A LC CD+ H+ N + H+R
Sbjct: 64 AAFIFCVEDRALLCRDCDEATHAPNTRSANHQR 96
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 66 CEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVEPF---FDSADSIVKSS 122
C+VCE+APA + C AD AALC CD ++H+AN LA +H+R+ ++ F D ++ +
Sbjct: 5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKA 64
Query: 123 PFNFLVGGSA 132
F F V A
Sbjct: 65 AFIFCVEDRA 74
>AT4G15250.1 | Symbols: | zinc finger (B-box type) family protein |
chr4:8709942-8711106 REVERSE
Length = 330
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKAD 81
RCD C T A +C++DSA LCLNCD +H AN L RH R +CE C P AV C +
Sbjct: 4 RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNE 63
Query: 82 AAALCVTCDDDIHSANPLARRHERVPVEPFFD 113
+LC C ++N H + P+ D
Sbjct: 64 NVSLCQGC--QWTASNCTGLGHRLQSLNPYSD 93
>AT5G48250.1 | Symbols: | zinc finger (B-box type) family protein |
chr5:19561719-19563113 REVERSE
Length = 373
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKADA 82
CD C + +CR+D+A LCL+CD +H AN L RH R +CE C PA+V C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDER 64
Query: 83 AALCVTCDDDIHSA--NPLARRHERVPVEPFFDSADSIVKSSPFNFLV 128
+LC CD H + H+R + + S SS ++F +
Sbjct: 65 VSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCM 112
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
R V+RY+EK+K RKF+K +RY SRK A+ R R+KGRF K E
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGE 360
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 64 WMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPV 108
+MC+ C + + V C++DAA LC++CD ++HSAN L++RH R V
Sbjct: 3 YMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLV 47
>AT1G68190.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:25559384-25561004 FORWARD
Length = 356
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%)
Query: 21 RRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKA 80
R C+ CK A +C AD+A LCL CD+K+H AN L RH R +C+ C+ P V C
Sbjct: 12 RVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRCFD 71
Query: 81 DAAALCVTCDDDIHSANPLARR 102
LC C+D H R
Sbjct: 72 HKMFLCHGCNDKFHGGGSSEHR 93
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 56 LVSRHERVWMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERV 106
++ ERV CE C+ A V C AD A LC+TCD +HSAN L+ RH R
Sbjct: 6 IIENMERV--CEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRT 54
>AT3G21880.1 | Symbols: | zinc finger (B-box type) family protein |
chr3:7706748-7708093 FORWARD
Length = 364
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKAD 81
+CD C T+ A +C++D A LCLNCD +H AN L RH R +CE C PAA+ C +
Sbjct: 4 KCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDE 63
Query: 82 AAALCVTCDDDIHSANPLARRHERVPVEPF 111
+ C C H +N H + PF
Sbjct: 64 KVSYCQGC--HWHESNCSELGHRVQSLNPF 91
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 30/42 (71%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 335
R LRY+EK+ R F K IRYASRKA A+TR R+KGRF K
Sbjct: 307 RNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVK 348
>AT3G07650.4 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKADA 82
CD C + +CR+D+A LCL+CD +H AN L RH R +CE C PA V C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 83 AALCVTCDDDIH 94
+LC CD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 292 IDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
+ R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K E
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGE 359
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 64 WMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPV 108
+MC+ C + + V C++DAA LC++CD +HSAN L++RH R V
Sbjct: 3 YMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV 47
>AT3G07650.3 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKADA 82
CD C + +CR+D+A LCL+CD +H AN L RH R +CE C PA V C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 83 AALCVTCDDDIH 94
+LC CD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 292 IDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
+ R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K E
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGE 359
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 64 WMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPV 108
+MC+ C + + V C++DAA LC++CD +HSAN L++RH R V
Sbjct: 3 YMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV 47
>AT3G07650.2 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKADA 82
CD C + +CR+D+A LCL+CD +H AN L RH R +CE C PA V C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 83 AALCVTCDDDIH 94
+LC CD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 292 IDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
+ R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K E
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGE 359
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 64 WMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPV 108
+MC+ C + + V C++DAA LC++CD +HSAN L++RH R V
Sbjct: 3 YMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV 47
>AT3G07650.1 | Symbols: COL9 | COL9 (CONSTANS-LIKE 9);
transcription factor/ zinc ion binding |
chr3:2442494-2443901 FORWARD
Length = 372
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCEQAPAAVTCKADA 82
CD C + +CR+D+A LCL+CD +H AN L RH R +CE C PA V C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 83 AALCVTCDDDIH 94
+LC CD H
Sbjct: 65 VSLCQNCDWSGH 76
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 292 IDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
+ R V+RY+EK+K RKF+K +RYASRKA A+ R R+KGRF K E
Sbjct: 313 VTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGE 359
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 64 WMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPV 108
+MC+ C + + V C++DAA LC++CD +HSAN L++RH R V
Sbjct: 3 YMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV 47
>AT1G73870.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:27779214-27780522 FORWARD
Length = 392
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 36/47 (76%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEI 339
+REARVLRY+EKR+ R F K IRY RK AE RPRIKGRF KRT +
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTSL 390
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 1 MGIELETLKSLAGGWSSVSARRCDSC-KTAPAAAFCRADSAYLCLNCDSKIHGANKLVSR 59
M +++E+ + G ++AR CD+C K + A+ +C AD A+LC +CD+ IH AN L R
Sbjct: 1 MVVDVESRTASVTG-EKMAARGCDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKR 59
Query: 60 HERVWM 65
HERV +
Sbjct: 60 HERVRL 65
>AT4G39070.1 | Symbols: | zinc finger (B-box type) family protein |
chr4:18205061-18206421 REVERSE
Length = 242
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 23 CDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVW----------MCEVCEQA 72
C C A+ FC AD A LC CD +H ANKL +H R +C++C +
Sbjct: 5 CAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGER 64
Query: 73 PAAVTCKADAAALCVTCDDDIHSANPLARRHER 105
A + C+ D A LC CD IH AN ++H R
Sbjct: 65 RALLFCQEDRAILCRECDIPIHQANEHTKKHNR 97
>AT1G49130.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175936 REVERSE
Length = 326
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 39/55 (70%), Gaps = 7/55 (12%)
Query: 290 PGID-------REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 337
PGI+ REARV RYR+KRKNR FEK IRY RK A+ RPR+KGRF +R+
Sbjct: 267 PGIEEKRVRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 321
>AT1G49130.2 | Symbols: | zinc finger (B-box type) family protein |
chr1:18174741-18175811 REVERSE
Length = 319
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 39/55 (70%), Gaps = 7/55 (12%)
Query: 290 PGID-------REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 337
PGI+ REARV RYR+KRKNR FEK IRY RK A+ RPR+KGRF +R+
Sbjct: 260 PGIEEKRVRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 314
>AT1G68520.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:25709331-25710749 REVERSE
Length = 406
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 34/46 (73%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEI 339
REARV RYREKR+ R F K IRY RK AE RPR+KGRF KR+ I
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSSI 402
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 33/56 (58%)
Query: 8 LKSLAGGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERV 63
+KSLA +AR CDSC A +C AD A+LC CD +H AN L RHERV
Sbjct: 2 MKSLASAVGGKTARACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERV 57
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 66 CEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVE 109
C+ C + A C AD A LC CD +HSANPLARRHERV ++
Sbjct: 17 CDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERVRLK 60
>AT4G10240.1 | Symbols: | zinc finger (B-box type) family protein |
chr4:6368967-6369526 REVERSE
Length = 162
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 22 RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVW---------------MC 66
+C+ C+ A A C +D A LC CD K+H ANKL RH RV +C
Sbjct: 4 QCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGAPLC 63
Query: 67 EVCEQAPAAVTCKADAAALCVTCDDDIHSANPLAR 101
++C++ C D A LC CD+ IH+ N R
Sbjct: 64 DICQERKGYFFCLEDRAMLCNDCDEAIHTCNSHQR 98
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 66 CEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERVPVE 109
CEVCE+A A V C +D A LC CD +H AN L +RH RV ++
Sbjct: 5 CEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQ 48
>AT5G57180.2 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170763
FORWARD
Length = 435
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 259 SDISYPFGQNINNSAGPNVXXXXXXXXXXXXPGIDREARVLRYREKRKNRKFEKTIRYAS 318
SD + PF I S +V G+ REA VLRY+EKR+ R F K IRY
Sbjct: 349 SDKTSPFPDEIQGSEAVDVNARLAQIDLFGDSGM-REASVLRYKEKRRTRLFSKKIRYQV 407
Query: 319 RKAYAETRPRIKGRFAKR 336
RK A+ RPR+KGRF +R
Sbjct: 408 RKLNADQRPRMKGRFVRR 425
>AT1G25440.1 | Symbols: | zinc finger (B-box type) family protein |
chr1:8933939-8935284 REVERSE
Length = 417
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 32/43 (74%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 336
REARV RYREKR+ R F K IRY RK AE RPR+KGRF KR
Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 8 LKSLAGGWSSVSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERV 63
+KSLA + +AR CDSC A +C AD A+LC +CDS +H AN L RHERV
Sbjct: 2 MKSLANAVGAKTARACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERV 57
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 66 CEVCEQAPAAVTCKADAAALCVTCDDDIHSANPLARRHERV 106
C+ C + A C AD A LC +CD +HSANPLARRHERV
Sbjct: 17 CDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERV 57
>AT4G25990.1 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE
Length = 394
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 336
REA VLRY+EKR+NR F K IRY RK A+ RPR+KGRF +R
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKGRFVRR 383
>AT5G14370.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: CCT domain
(InterPro:IPR010402); BEST Arabidopsis thaliana protein
match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to
1506 proteins in 139 species: Archae - 0; Bacteria - 8;
Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0;
Other Eukaryotes - 318 (source: NCBI BLink). |
chr5:4632147-4633651 REVERSE
Length = 339
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 33/43 (76%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 336
REA +LRY+EKR+NR F K IRY RK AE RPR+KGRF KR
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
>AT1G07050.1 | Symbols: | CONSTANS-like protein-related |
chr1:2164327-2165133 REVERSE
Length = 195
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 32/43 (74%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 336
REA VLRY+EKR++R F K IRY RK A+ RPR KGRF KR
Sbjct: 151 REASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>AT5G41380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G63820.1); Has 952 Blast hits to 949 proteins
in 72 species: Archae - 0; Bacteria - 0; Metazoa - 12;
Fungi - 2; Plants - 890; Viruses - 0; Other Eukaryotes -
48 (source: NCBI BLink). | chr5:16562129-16563553
REVERSE
Length = 307
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEI 339
+R+ ++ +YR KR R F KTI+YA RK A++RPRI+GRFA+ E+
Sbjct: 214 ERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDEV 260
>AT5G02810.1 | Symbols: PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE
REGULATOR 7); transcription regulator/ two-component
response regulator | chr5:638283-641461 REVERSE
Length = 727
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHL 346
REA + ++R+KRK R F K +RY SRK AE RPR++G+F ++T +D N +
Sbjct: 669 REAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDDNDI 721
>AT1G63820.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN:
flower, root; EXPRESSED DURING: petal differentiation
and expansion stage; CONTAINS InterPro DOMAIN/s: CCT
domain (InterPro:IPR010402); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41380.1);
Has 907 Blast hits to 907 proteins in 64 species: Archae
- 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 882;
Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
| chr1:23682529-23684050 REVERSE
Length = 293
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEI 339
+R+ ++ +YR KR R F KTI+YA RK A+ RPR++GRFA+ E+
Sbjct: 191 ERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEV 237
>AT1G04500.1 | Symbols: | zinc finger CONSTANS-related |
chr1:1221757-1224235 REVERSE
Length = 386
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEI 339
R+ ++ RY +KR R F K I+YA RK A++RPR++GRFAK E
Sbjct: 288 RKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEF 333
>AT2G33350.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7688 Blast hits
to 4734 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 118; Plants - 919; Viruses -
0; Other Eukaryotes - 6470 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 409
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHLYGSPSSV 353
R+ ++ RY +KR R F K I+YA RK A++RPR++GRFAK E +G P+
Sbjct: 310 RKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDE--------FGEPNRQ 361
Query: 354 GF 355
F
Sbjct: 362 AF 363
>AT2G33350.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: zinc finger
CONSTANS-related (TAIR:AT1G04500.1); Has 7691 Blast hits
to 4729 proteins in 129 species: Archae - 8; Bacteria -
25; Metazoa - 148; Fungi - 114; Plants - 918; Viruses -
0; Other Eukaryotes - 6478 (source: NCBI BLink). |
chr2:14134116-14136836 FORWARD
Length = 410
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHLYGSPSSV 353
R+ ++ RY +KR R F K I+YA RK A++RPR++GRFAK E +G P+
Sbjct: 311 RKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDE--------FGEPNRQ 362
Query: 354 GF 355
F
Sbjct: 363 AF 364
>AT4G27900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins
in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr4:13890858-13892777
FORWARD
Length = 261
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIE 340
DR ++ RYR K+ R F + I+YA RKA A+++PRI+GRFAK E++
Sbjct: 213 DRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAKTEEMQ 260
>AT4G27900.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G53420.1); Has 876 Blast hits to 876 proteins
in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr4:13890858-13892777
FORWARD
Length = 261
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIE 340
DR ++ RYR K+ R F + I+YA RKA A+++PRI+GRFAK E++
Sbjct: 213 DRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAKTEEMQ 260
>AT5G24470.1 | Symbols: APRR5, PRR5 | APRR5 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 5); transcription regulator/
two-component response regulator | chr5:8356204-8358873
REVERSE
Length = 667
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 292 IDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
+ REA + ++R KRK+R +EK +RY SRK AE RPRIKG+F ++ +
Sbjct: 616 LQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQ 662
>AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19232874-19234901 FORWARD
Length = 468
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 335
REA ++++R KRK+R F+K +RY SRK AE RPR+KG+F +
Sbjct: 417 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 458
>AT5G61380.1 | Symbols: TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB
EXPRESSION 1); transcription regulator/ two-component
response regulator | chr5:24675540-24678176 FORWARD
Length = 618
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE-IESDMNHLYGSPSS 352
RE +L++R KR R F+K IRY +RK AE RPR+KG+F ++ + D+N G P S
Sbjct: 533 REEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLN---GQPDS 589
Query: 353 VGF 355
+
Sbjct: 590 ADY 592
>AT2G46790.2 | Symbols: APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 9); protein binding /
transcription regulator/ two-component response
regulator | chr2:19233422-19234901 FORWARD
Length = 351
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 335
REA ++++R KRK+R F+K +RY SRK AE RPR+KG+F +
Sbjct: 300 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 341
>AT4G27310.1 | Symbols: | zinc finger (B-box type) family protein
| chr4:13675853-13676616 FORWARD
Length = 223
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 20 ARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCE 70
++CD C A +C +D A LC +CD K+HGAN LV++H R +C C+
Sbjct: 2 GKKCDLC-NGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQ 51
>AT3G21890.1 | Symbols: | zinc finger (B-box type) family protein
| chr3:7709298-7709663 REVERSE
Length = 121
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 6 ETLKSLAGGWSSVSAR-----RCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRH 60
E+ +S GG S+ R RC+ C A+ FC ADSA+LC CD +HGAN L RH
Sbjct: 9 ESRRSDGGGCRSLCTRPSVPVRCELCD-GDASVFCEADSAFLCRKCDRWVHGANFLAWRH 67
Query: 61 ERVWMCEVCEQAPAAVTCKADAAALCVTCDDDIHSANP 98
R +C C++ C+ D D H P
Sbjct: 68 VRRVLCTSCQKLTRR----------CLVGDHDFHVVLP 95
>AT5G60100.1 | Symbols: APRR3, PRR3 | APRR3 (ARABIDOPSIS
PSEUDO-RESPONSE REGULATOR 3); transcription regulator/
two-component response regulator |
chr5:24198215-24200502 REVERSE
Length = 495
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 336
REA ++++R KRK R FEK +RY SRK AE RP +KG+F ++
Sbjct: 442 REAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484
>AT5G57180.1 | Symbols: CIA2 | CIA2 (CHLOROPLAST IMPORT APPARATUS
2); transcription regulator | chr5:23168393-23170294
FORWARD
Length = 424
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 259 SDISYPFGQNINNSAGPNVXXXXXXXXXXXXPGIDREARVLRYREKRKNRKFEKTIRYAS 318
SD + PF I S +V G+ REA VLRY+EKR+ R F K IRY
Sbjct: 349 SDKTSPFPDEIQGSEAVDVNARLAQIDLFGDSGM-REASVLRYKEKRRTRLFSKKIRYQV 407
Query: 319 RKAYAETRPRIK 330
RK A+ RPR+K
Sbjct: 408 RKLNADQRPRMK 419
>AT5G53420.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins
in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr5:21673683-21675469
FORWARD
Length = 264
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
DR ++ RY+ K+ R F + I+YA RKA A+++PR++GRFAK E
Sbjct: 217 DRREKLSRYKNKKSRRNFGRKIKYACRKALADSQPRVRGRFAKTEE 262
>AT2G46670.1 | Symbols: | pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative |
chr2:19164589-19165233 REVERSE
Length = 183
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAK 335
REA ++++R KRK+R F+K +RY SRK AE RPR+KG+F +
Sbjct: 131 QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR 173
>AT4G25990.2 | Symbols: CIL | CIL | chr4:13191937-13193543 REVERSE
Length = 409
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 15/58 (25%)
Query: 294 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIK---------------GRFAKR 336
REA VLRY+EKR+NR F K IRY RK A+ RPR+K GRF +R
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMKVKDWHCNIVVVSHQQGRFVRR 398
>AT5G53420.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27900.2); Has 863 Blast hits to 863 proteins
in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 840; Viruses - 0; Other Eukaryotes -
23 (source: NCBI BLink). | chr5:21674700-21675469
FORWARD
Length = 185
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTE 338
DR ++ RY+ K+ R F + I+YA RKA A+++PR++GRFAK E
Sbjct: 138 DRREKLSRYKNKKSRRNFGRKIKYACRKALADSQPRVRGRFAKTEE 183
>AT3G12890.1 | Symbols: ASML2 | ASML2 (ACTIVATOR OF SPOMIN::LUC2);
transcription activator | chr3:4099223-4100277 FORWARD
Length = 251
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 293 DREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDMNHL 346
+R+ R++RY +K+ R F KTI+Y RK A+ R R++GRFA+ + + H+
Sbjct: 138 ERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQPHM 191
>AT5G54470.1 | Symbols: | zinc finger (B-box type) family protein
| chr5:22114584-22115315 REVERSE
Length = 215
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 18 VSARRCDSCKTAPAAAFCRADSAYLCLNCDSKIHGANKLVSRHERVWMCEVCE 70
+ ++C+ C A +C +D A LC +CD K+HGAN LV++H R +C C+
Sbjct: 1 MGKKKCELC-CGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQ 52
>AT5G59990.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex,
stem, leaf whorl, flower; EXPRESSED DURING: petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: CCT domain (InterPro:IPR010402); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G41380.1); Has 918 Blast hits to 918 proteins
in 64 species: Archae - 0; Bacteria - 0; Metazoa - 1;
Fungi - 0; Plants - 885; Viruses - 0; Other Eukaryotes -
32 (source: NCBI BLink). | chr5:24151206-24153084
REVERSE
Length = 241
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 301 YREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEI 339
YR KR R F K I+Y RK A++RPRI+GRFA+ EI
Sbjct: 170 YRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEI 208