Jatropha Genome Database

JcCB0058551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058551.10 - phase: 0 
         (131 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70280.2 | Symbols:  | NHL repeat-containing protein | chr1:2...   141   1e-34
AT1G23880.1 | Symbols:  | NHL repeat-containing protein | chr1:8...   135   6e-33
AT5G14890.1 | Symbols:  | NHL repeat-containing protein | chr5:4...   109   4e-25
AT1G70280.1 | Symbols:  | NHL repeat-containing protein | chr1:2...    96   4e-21
AT3G14860.2 | Symbols:  | NHL repeat-containing protein | chr3:4...    60   3e-10
AT3G14860.1 | Symbols:  | NHL repeat-containing protein | chr3:4...    60   4e-10
AT1G23890.1 | Symbols:  | NHL repeat-containing protein | chr1:8...    48   2e-06
AT1G23890.2 | Symbols:  | NHL repeat-containing protein | chr1:8...    48   2e-06

>AT1G70280.2 | Symbols:  | NHL repeat-containing protein |
           chr1:26466086-26468471 REVERSE
          Length = 509

 Score =  141 bits (355), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/115 (67%), Positives = 88/115 (76%)

Query: 4   MGKDXXXXXXXXXXXXGDVSSAPSTASPAKIVSGYFSNAVSAFMKWLWSLKATTKTAITG 63
           MG+D            G VSSAPS  SPAKI++G+ SN  S+ MKWLWSLK TTKT I  
Sbjct: 1   MGRDFLVLSILILLLSGIVSSAPSANSPAKILNGFISNHGSSLMKWLWSLKTTTKTTIAT 60

Query: 64  RPTMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNIYRISSSLSL 118
           R  +KFE+GY+VETVFDGSKLGIEPYS+EVLP GELLILDS NSNIY+ISSSLSL
Sbjct: 61  RSMVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSL 115


>AT1G23880.1 | Symbols:  | NHL repeat-containing protein |
           chr1:8436125-8438636 FORWARD
          Length = 545

 Score =  135 bits (340), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/99 (67%), Positives = 82/99 (82%), Gaps = 2/99 (2%)

Query: 22  VSSAPSTASPAKIVSGYFSNAVSAFMKWLWSL--KATTKTAITGRPTMKFESGYTVETVF 79
           V+SAPS+ SPAKIV+ + SN  ++ +KWLWSL  K TTKTA+  +  +KFE+GY+VETV 
Sbjct: 79  VASAPSSTSPAKIVNSFISNHGTSLLKWLWSLSFKTTTKTAVPTKSMVKFENGYSVETVL 138

Query: 80  DGSKLGIEPYSVEVLPGGELLILDSANSNIYRISSSLSL 118
           DGSKLGIEPYS++VL  GELLILDS NSNIY+ISSSLSL
Sbjct: 139 DGSKLGIEPYSIQVLSNGELLILDSQNSNIYQISSSLSL 177


>AT5G14890.1 | Symbols:  | NHL repeat-containing protein |
           chr5:4818056-4821534 FORWARD
          Length = 754

 Score =  109 bits (273), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 7/103 (6%)

Query: 22  VSSAPSTASPAKIVSGYFSNAVSAFMKWLWSLKATT------KTAITGRPTMKFESGYTV 75
           +SS  +   P KIVSG  +N  S   KWLWSL+ +T      K+ ++ R  +K+ESGY +
Sbjct: 21  LSSVSAKPPPVKIVSGLVTNVASILWKWLWSLQTSTTTTTTTKSGVSSRSMVKYESGYNM 80

Query: 76  ETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNIYRISSSLS 117
           ETVFDGSKLGIEPY++EV P GGEL++LDS NSNI++IS  LS
Sbjct: 81  ETVFDGSKLGIEPYAIEVSPNGGELIVLDSENSNIHKISMPLS 123


>AT1G70280.1 | Symbols:  | NHL repeat-containing protein |
           chr1:26466086-26468116 REVERSE
          Length = 447

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/52 (86%), Positives = 50/52 (96%)

Query: 67  MKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNIYRISSSLSL 118
           +KFE+GY+VETVFDGSKLGIEPYS+EVLP GELLILDS NSNIY+ISSSLSL
Sbjct: 2   VKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSL 53


>AT3G14860.2 | Symbols:  | NHL repeat-containing protein |
           chr3:4998591-5000894 REVERSE
          Length = 493

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 36  SGYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVFDGSKLGIEPYSVEVLP 95
           SG     +S+ +KW  +  +++K + +    ++FE+GY VETV +G+ +G+ PY + V  
Sbjct: 42  SGSLIKHMSSVLKW--TTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSD 99

Query: 96  GGELLILDSANSNIYRISSSLS 117
            GEL  +D  NSNI +I+  LS
Sbjct: 100 DGELYAVDELNSNIMKITPPLS 121


>AT3G14860.1 | Symbols:  | NHL repeat-containing protein |
           chr3:4998591-5000894 REVERSE
          Length = 492

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 36  SGYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVFDGSKLGIEPYSVEVLP 95
           SG     +S+ +KW  +  +++K + +    ++FE+GY VETV +G+ +G+ PY + V  
Sbjct: 42  SGSLIKHMSSVLKW--TTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSD 99

Query: 96  GGELLILDSANSNIYRISSSLS 117
            GEL  +D  NSNI +I+  LS
Sbjct: 100 DGELYAVDELNSNIMKITPPLS 121


>AT1G23890.1 | Symbols:  | NHL repeat-containing protein |
           chr1:8439321-8440803 REVERSE
          Length = 261

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 69  FESGYTVETVFDGSKLGIEPYSVEVLPG-GELLILDSANSNIYRISSSLSL 118
            E GY V TV DG K G+ PY++  LPG   L++LDS+ S  Y  S  LS+
Sbjct: 25  LEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSV 75


>AT1G23890.2 | Symbols:  | NHL repeat-containing protein |
           chr1:8438900-8440803 REVERSE
          Length = 400

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 69  FESGYTVETVFDGSKLGIEPYSVEVLPG-GELLILDSANSNIYRISSSLSL 118
            E GY V TV DG K G+ PY++  LPG   L++LDS+ S  Y  S  LS+
Sbjct: 25  LEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSV 75