Jatropha Genome Database

JcCB0058331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058331.10 + phase: 0 /partial
         (91 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55400.1 | Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP bindi...   109   4e-25

>AT3G55400.1 | Symbols: OVA1 | OVA1 (OVULE ABORTION 1); ATP binding
           / aminoacyl-tRNA ligase/ methionine-tRNA ligase/
           nucleotide binding | chr3:20535809-20538999 REVERSE
          Length = 616

 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 1   MRIIAIALSPVAPSLSWRIYAQLGYSQDHFNSITWSETKWGGLKGGQVMAQPKPVFARIE 60
           MR+IA+ALSPVAP LS RIY+QLGY++D FNSITWS+TKWGGLKGGQVM Q  PVFARIE
Sbjct: 522 MRVIAVALSPVAPCLSLRIYSQLGYTEDQFNSITWSDTKWGGLKGGQVMEQASPVFARIE 581