Jatropha Genome Database
- JcCB0057761.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0057761.30 - phase: 0
(71 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28230.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 91 1e-19
AT2G28020.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 82 5e-17
AT4G09070.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 80 4e-16
>AT2G28230.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
TATA-binding related factor (InterPro:IPR013921); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G09070.1); Has 43 Blast hits to 43 proteins in
21 species: Archae - 0; Bacteria - 0; Metazoa - 22;
Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes -
3 (source: NCBI BLink). | chr2:12037855-12039009 REVERSE
Length = 219
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 56/70 (80%), Gaps = 2/70 (2%)
Query: 1 MEKGRQVMEEFFDIWQEAISKRSLPGHFMHIEPNFAEYGLLDQYSSQHTAVQYATVVAQL 60
MEK ++VMEEF +IW EA++KRSLPG F++I+ NF E+GL D Y+ QHTAV+YA V+A +
Sbjct: 151 MEKAQKVMEEFLEIWNEALAKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHM 210
Query: 61 IATQSVQATR 70
IAT VQA R
Sbjct: 211 IAT--VQAVR 218
>AT2G28020.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; CONTAINS
InterPro DOMAIN/s: TATA-binding related factor
(InterPro:IPR013921); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G28230.1); Has 18
Blast hits to 18 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:11933728-11933940 FORWARD
Length = 70
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 3/70 (4%)
Query: 1 MEKGRQVMEEFFDIWQEAISKRSLPGHFMHIEPNFAEYGLLDQYSSQHTAVQ-YATVVAQ 59
ME R+VMEEF +IW EA++KRSLPG F++ + NF E+GL D Y+ QHTAV+ YA V+A
Sbjct: 1 MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAH 60
Query: 60 LIATQSVQAT 69
+IAT VQA
Sbjct: 61 MIAT--VQAV 68
>AT4G09070.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
TATA-binding related factor (InterPro:IPR013921); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G28230.1); Has 41 Blast hits to 41 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 18;
Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes -
5 (source: NCBI BLink). | chr4:5802308-5803392 FORWARD
Length = 219
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Query: 1 MEKGRQVMEEFFDIWQEAISKRSLPGHFMHIEPNFAEYGLLDQYSSQHTAVQYATVVAQL 60
M +++MEEF +IWQEA+SKRSLPG F++ E NF ++GL D Y+ QHTAV YA +A L
Sbjct: 151 MGMAKKLMEEFLEIWQEAMSKRSLPGKFVNKELNFEKFGLGDNYTPQHTAVGYAFFMANL 210
Query: 61 IATQSVQATRN 71
+A ++QA R
Sbjct: 211 MA--AIQAGRG 219