Jatropha Genome Database
- JcCB0057531.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0057531.10 + phase: 0
(414 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.2 | Symbols: | F-box family protein | chr4:7441815-74... 72 5e-13
AT4G12560.1 | Symbols: | F-box family protein | chr4:7441815-74... 72 5e-13
AT4G17780.1 | Symbols: | F-box family protein | chr4:9880321-98... 66 3e-11
AT2G43260.1 | Symbols: | F-box family protein / S locus-related... 61 1e-09
AT2G43440.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 59 4e-09
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 49 7e-06
>AT4G12560.2 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 82/342 (23%)
Query: 40 DCISNILIRLPLESLQSSRFVCKPWYNIINSPIFIDAHLRR----SESVLIFLESVQNER 95
D +++I +RLP ++L R + KP Y++IN P FI++HL R + ++I L
Sbjct: 7 DIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALR-- 64
Query: 96 YPYLERSMPTQKPNYFSVESSFLQSKPVPIFGQPVNTLPKFRIQFLEFKEGKSKVTEYKV 155
+SV+ L S + +E + TE
Sbjct: 65 --------------LYSVDLDSLDS-----------------VSDVEHPMKRGGPTEVFG 93
Query: 156 SCLGLIRATCNXXXXXXXXXXXXXXXVMNPVTRKLMALPLGTIYPPQNES------YGFA 209
S GLI + V NP TR++ LP +I P S YG
Sbjct: 94 SSNGLIGLS----------NSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLG 143
Query: 210 LSNTTGEYKVVHLFR------DELGY---VSCEILNIGTRFWREVN--GPSFGLFGWFGY 258
+ + +YKVV + + DELG ++ ++ W+ + S L +F Y
Sbjct: 144 YDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYY 203
Query: 259 E-------PVSAIGALHWV----PQVDHNDYIVSMEVDNEKFHTIRLPENCRTYDRIIEM 307
V A +LHWV P + + IV ++ E+F +R PE + I+M
Sbjct: 204 HLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQM 263
Query: 308 -----AGLLCLVV-HEELNIDIWNLKSIG-EGVWTKQYSITR 342
G LCL+ +++ +D+W +K WTK +++ +
Sbjct: 264 DIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQK 305
>AT4G12560.1 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 137/342 (40%), Gaps = 82/342 (23%)
Query: 40 DCISNILIRLPLESLQSSRFVCKPWYNIINSPIFIDAHLRR----SESVLIFLESVQNER 95
D +++I +RLP ++L R + KP Y++IN P FI++HL R + ++I L
Sbjct: 7 DIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALR-- 64
Query: 96 YPYLERSMPTQKPNYFSVESSFLQSKPVPIFGQPVNTLPKFRIQFLEFKEGKSKVTEYKV 155
+SV+ L S + +E + TE
Sbjct: 65 --------------LYSVDLDSLDS-----------------VSDVEHPMKRGGPTEVFG 93
Query: 156 SCLGLIRATCNXXXXXXXXXXXXXXXVMNPVTRKLMALPLGTIYPPQNES------YGFA 209
S GLI + V NP TR++ LP +I P S YG
Sbjct: 94 SSNGLIGLS----------NSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLG 143
Query: 210 LSNTTGEYKVVHLFR------DELGY---VSCEILNIGTRFWREVN--GPSFGLFGWFGY 258
+ + +YKVV + + DELG ++ ++ W+ + S L +F Y
Sbjct: 144 YDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYY 203
Query: 259 E-------PVSAIGALHWV----PQVDHNDYIVSMEVDNEKFHTIRLPENCRTYDRIIEM 307
V A +LHWV P + + IV ++ E+F +R PE + I+M
Sbjct: 204 HLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQM 263
Query: 308 -----AGLLCLVV-HEELNIDIWNLKSIG-EGVWTKQYSITR 342
G LCL+ +++ +D+W +K WTK +++ +
Sbjct: 264 DIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQK 305
>AT4G17780.1 | Symbols: | F-box family protein |
chr4:9880321-9881455 REVERSE
Length = 347
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 142/340 (41%), Gaps = 71/340 (20%)
Query: 25 VEDEQKRQNVPYFHKDCISNILIRLPLESLQSSRFVCKPWYNIINSPIFIDAHLRRSESV 84
+E+E+K + Y D + +I +RLPL+S+ S+ V K W +I+ S F++ + +
Sbjct: 1 MEEEEKNPSSIYIVADLLEDIFLRLPLKSILISKSVSKRWRSILESKTFVERRMSLQKKR 60
Query: 85 LIFLESVQNERYPYLERSMPTQKPNYFSVESSFLQSKPVPIFGQPVNTLPKFRIQFLEFK 144
I + N + + R +P + E +L QP
Sbjct: 61 KIL--AAYNCKCGWEPRLLPGSSQCKGNEEIVYLHCNA----AQP--------------- 99
Query: 145 EGKSKVTEYKVSCLGLIRATCNXXXXXXXXXXXXXXXVMNPVTRKL--------MALPLG 196
+C GL+ V+NP TR+L +G
Sbjct: 100 ---------SFTCDGLV-----------CILEPRWIDVLNPWTRQLRRYGFGFGTIFGVG 139
Query: 197 TIYPPQNESYGFALSNTTGEYKVVHL---------FRD-ELGYVSCEILNIGTRFWREVN 246
+ + P++ + GF TG YKVV + RD E+ Y +L++ T WR ++
Sbjct: 140 SAFSPRHWAMGFGKDKVTGSYKVVKMCLISFSEICARDPEVEY---SVLDVETGEWRMLS 196
Query: 247 GPSFGLFGWFGYEPVSAIGALHWVPQVDHNDY-IVSMEVDNEKFHTIRLPENCRTYD--R 303
P + +F E A G+++W+ + + I+++++ E+ H I +P+ T + +
Sbjct: 197 PPPYKVFEVRKSE--CANGSIYWLHKPTERAWTILALDLHKEELHNISVPDMSVTQETFQ 254
Query: 304 IIEMAGLLCLV---VHEELNIDIWNLKSIGEGVWTKQYSI 340
I+ + L + E ++IW++ + E WTK YSI
Sbjct: 255 IVNLEDRLAIANTYTKTEWKLEIWSMDTEVE-TWTKTYSI 293
>AT2G43260.1 | Symbols: | F-box family protein / S locus-related |
chr2:17983744-17985089 REVERSE
Length = 420
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 26/182 (14%)
Query: 182 VMNPVTRKLMALPLG------------TIYPPQNESYGFALSNTTGEYKVVHL------F 223
V+NP T +L P G + P N GF G YKVV +
Sbjct: 117 VLNPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWVMGFGRDKVNGRYKVVRMSFAFWRV 176
Query: 224 RDELGYVSCEILNIGTRFWREVNGPSFGLFGWFGYEPVSAIGALHWVPQVDHNDYIVSME 283
R E V C +L++ T WR+++ P + + G + V G+++W+ + I++++
Sbjct: 177 RQEEPVVECGVLDVDTGEWRKLSPPPYVVN--VGSKSVCVNGSIYWL-HIQTVYRILALD 233
Query: 284 VDNEKFHTIRLPENCRTYD-RIIEMAGLLCLV---VHEELNIDIWNLKSIGEGVWTKQYS 339
+ E+FH + +P T D +++ + L L V E +++W + + E W+K YS
Sbjct: 234 LHKEEFHKVPVPPTQITVDTQMVNLEDRLVLAITRVSPEWILEVWGMDTYKEK-WSKTYS 292
Query: 340 IT 341
I+
Sbjct: 293 IS 294
>AT2G43440.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Cyclin-like F-box (InterPro:IPR001810), F-box associated
(InterPro:IPR006527), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G43445.1); Has 740
Blast hits to 736 proteins in 32 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 738;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr2:18039326-18040599 FORWARD
Length = 401
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 144/337 (42%), Gaps = 62/337 (18%)
Query: 25 VEDEQKRQNVPYFHKDCISNILIRLPLESLQSSRFVCKPWYNIINSPIFIDAHLRRSESV 84
+E++++ N Y + + +I +RLPL+S+ + V + W +I+ S +F++ RR
Sbjct: 1 MEEKRENTNSIYIVPELLEDIFLRLPLKSILKFKTVSRQWRSILESKLFVE---RRG--- 54
Query: 85 LIFLESVQNERYPYLERSMPTQKPNYFSVESSFLQSKPVPIFGQPVNTLPKFRIQFLEFK 144
++Q + + NYF S F +S+ G I +L
Sbjct: 55 -----NLQKHH----RKILAAYNCNYFMRPSIFPESR---FEGDE-------EIVYLHCD 95
Query: 145 EGKSKVTEYKVSCLGLIRATCNXXXXXXXXXXXXXXXVMNPVT---RKLMALPLGTIYPP 201
+ +T C GL+ T V+NP R+ P P
Sbjct: 96 AAQPSMT-----CDGLLCIT-----------EPGWFNVLNPSAGQLRRFPPGPGPVKGPQ 139
Query: 202 QNESYGFALSNTTGEYKVVHL-FRD--ELGYVSCEILNIGTRFWREVNGPSFGLFGWFGY 258
+N GF N TG YK+V + F D E G IL+I T W ++ P + G
Sbjct: 140 ENWLLGFGRDNVTGRYKIVRMCFHDCYEFG-----ILDIETGVWSKLRSPPHNMLP--GS 192
Query: 259 EPVSAIGALHWVPQVDHNDYIVSMEVDNEKFHTI-RLPENCRTYD-RIIEMAGLLCLV-- 314
+ V G+++W+ Q+ I++M++ E +H + LP T + +++ + L +
Sbjct: 193 KSVCVNGSIYWL-QISAGYIILAMDLHEESYHGVHHLPATWVTQETQLVNLEDRLAMAMT 251
Query: 315 --VHEELNIDIWNLKSIGEGVWTKQYSITRGSVLDMV 349
V E ++IW++ G+G W+K YS ++ + +
Sbjct: 252 TNVGPEWILEIWSMDIEGKG-WSKGYSWSKSYSISLA 287
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD
Length = 427
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 151/396 (38%), Gaps = 54/396 (13%)
Query: 16 VEERALSKKVEDEQKRQNVP---YFHKDCISNILIRLPLESLQSSRFVCKPWYNIINSPI 72
+E ++ ED+ + P + I+ IL+RLP +S+ R V K + + + P
Sbjct: 12 MEATKRERRREDDDGEKASPESLVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPG 71
Query: 73 FIDAHLRRSESVLIFLESVQNERYPYLERSMPTQKPNYFSVE----SSFLQSKPVPIFGQ 128
F HL LI ++NE L R + N +S++ ++
Sbjct: 72 FAKIHLD-----LI----LRNESVRSLHRKLIVSSHNLYSLDFNSIGDGIRDLAAVEHNY 122
Query: 129 PVNTLPKFRIQFLEFKEGKSKVTEYKVSC--------LGLIRATCNXXXXXXXXXXXXXX 180
P+ P + + G + +V + +
Sbjct: 123 PLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSYRRNWVEIVGSSNGLVCISPGEGAV 182
Query: 181 XVMNPVTRKLMALP-----LGTIYPPQN-ESYGFALSNTTGEYKVVHLFRDELGYVSCEI 234
+ NP T LP Y N ++YGF T +YK+V L + +
Sbjct: 183 FLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDILDASV 242
Query: 235 LNIGTRFWREVNGPSFGLFGWFGYEPVSAIGALHWV-PQVDHND-YIVSMEVDNEKFHTI 292
++ WR + ++ V GA+HWV + HN +V+ ++ E+F +
Sbjct: 243 YSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREM 302
Query: 293 RLP---ENC--RTYDRII-EMAGLLCLV-----VHEELNIDIWNLKSIGEGVWTKQYSIT 341
+P E+C R + ++ + G LC+V VH+ DIW + GE K +S
Sbjct: 303 PVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHD----DIWVMSEYGEA---KSWSRI 355
Query: 342 RGSVL--DMVPMFSLRISGDIIFKRAEDGSFYAYDF 375
R ++L M P+ S + +++ + DG Y+F
Sbjct: 356 RINLLYRSMKPLCSTKNDEEVLLEL--DGDLVLYNF 389