Jatropha Genome Database

JcCB0057251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057251.10 - phase: 0 
         (390 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32720.1 | Symbols: AtLa1 | AtLa1 (Arabidopsis thaliana La pr...   286   1e-77
AT4G32720.2 | Symbols: AtLa1 | AtLa1 (Arabidopsis thaliana La pr...   285   3e-77
AT1G79880.1 | Symbols:  | La domain-containing protein | chr1:30...   202   4e-52
AT1G79880.2 | Symbols:  | La domain-containing protein | chr1:30...   168   7e-42
AT1G79880.3 | Symbols:  | La domain-containing protein | chr1:30...   167   9e-42
AT2G43970.1 | Symbols:  | La domain-containing protein | chr2:18...    52   6e-07
AT2G43970.2 | Symbols:  | La domain-containing protein | chr2:18...    52   6e-07

>AT4G32720.1 | Symbols: AtLa1 | AtLa1 (Arabidopsis thaliana La
           protein 1); RNA binding | chr4:15787313-15789683 FORWARD
          Length = 433

 Score =  286 bits (733), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/380 (45%), Positives = 229/380 (60%), Gaps = 58/380 (15%)

Query: 1   MAMPSLDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLA 60
           M++P L E TAK VLRQVEFY + +     +F+K T+  SEDG            +VSLA
Sbjct: 1   MSIPCLTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDG------------LVSLA 48

Query: 61  LICSFKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDE 120
           LICSF KM+GYLKL D K ++IPEDT+KAVA+TLR S++LK+S+DGKKVGR   LLK ++
Sbjct: 49  LICSFSKMRGYLKLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLED 108

Query: 121 AIEQLDGRTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTE 180
            IEQL+ RTVAASP  YDVKREDVESFF +Y KV SVR+PRHVA+ R+F G AL+EF TE
Sbjct: 109 LIEQLNARTVAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTE 168

Query: 181 EDTENILKQSLVFDGVQLELKPKKEFDADRAELEEEFKN-RPL-------TGXXXXXXXX 232
           ED +N++KQ+LVF G +LELKPKKEFD +R + E +F N +P         G        
Sbjct: 169 EDAQNVMKQNLVFAGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSA 228

Query: 233 AEAAYPKGLIVAFTLKGLSAGGSVGHDQEPVNVEADVNKEDGLPSVENADQENKEVSENV 292
            E  YPKGLI++FTLK  +  G+               K    P+ +  ++   + ++  
Sbjct: 229 YEPDYPKGLIISFTLKRSAEEGTTEQ------------KSSEEPTDKTMEESETKPADTP 276

Query: 293 SGDKENDEMNIEGNEEEADKEIGSESKERQLEEGEKSSEDSAGKDKEQKERPKADAFRDD 352
             DKEN                           GE  +E +  +D E++E+      +D+
Sbjct: 277 DADKEN--------------------------TGEVQAEGAEDEDDEKEEKGALATHKDN 310

Query: 353 KNVVLREDIKGVLGKFGTIK 372
           K+VVLRED+K V GKFG +K
Sbjct: 311 KDVVLREDLKAVFGKFGDVK 330


>AT4G32720.2 | Symbols: AtLa1 | AtLa1 (Arabidopsis thaliana La
           protein 1); RNA binding | chr4:15787313-15789498 FORWARD
          Length = 404

 Score =  285 bits (729), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 173/380 (45%), Positives = 229/380 (60%), Gaps = 58/380 (15%)

Query: 1   MAMPSLDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLA 60
           M++P L E TAK VLRQVEFY + +     +F+K T+  SEDG            +VSLA
Sbjct: 1   MSIPCLTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDG------------LVSLA 48

Query: 61  LICSFKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDE 120
           LICSF KM+GYLKL D K ++IPEDT+KAVA+TLR S++LK+S+DGKKVGR   LLK ++
Sbjct: 49  LICSFSKMRGYLKLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLED 108

Query: 121 AIEQLDGRTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTE 180
            IEQL+ RTVAASP  YDVKREDVESFF +Y KV SVR+PRHVA+ R+F G AL+EF TE
Sbjct: 109 LIEQLNARTVAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTE 168

Query: 181 EDTENILKQSLVFDGVQLELKPKKEFDADRAELEEEFKN-RPL-------TGXXXXXXXX 232
           ED +N++KQ+LVF G +LELKPKKEFD +R + E +F N +P         G        
Sbjct: 169 EDAQNVMKQNLVFAGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSA 228

Query: 233 AEAAYPKGLIVAFTLKGLSAGGSVGHDQEPVNVEADVNKEDGLPSVENADQENKEVSENV 292
            E  YPKGLI++FTLK  +  G+               K    P+ +  ++   + ++  
Sbjct: 229 YEPDYPKGLIISFTLKRSAEEGTTEQ------------KSSEEPTDKTMEESETKPADTP 276

Query: 293 SGDKENDEMNIEGNEEEADKEIGSESKERQLEEGEKSSEDSAGKDKEQKERPKADAFRDD 352
             DKEN                           GE  +E +  +D E++E+      +D+
Sbjct: 277 DADKEN--------------------------TGEVQAEGAEDEDDEKEEKGALATHKDN 310

Query: 353 KNVVLREDIKGVLGKFGTIK 372
           K+VVLRED+K V GKFG +K
Sbjct: 311 KDVVLREDLKAVFGKFGDVK 330


>AT1G79880.1 | Symbols:  | La domain-containing protein |
           chr1:30046222-30048336 REVERSE
          Length = 399

 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 112/282 (39%), Positives = 168/282 (59%), Gaps = 24/282 (8%)

Query: 5   SLDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLALICS 64
           S +E TAK++L QVEFY + +      F+   +  S+DG            +VSL L+CS
Sbjct: 4   SFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDG------------LVSLPLVCS 51

Query: 65  FKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDEAIEQ 124
           F +M+  L L ++  E+IP   ++ VA  LR S  LKVS +G+++GR   L KP+E +EQ
Sbjct: 52  FSRMRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQ 111

Query: 125 LDGRTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTEEDTE 184
           +  RT+AASP  Y +K EDV SFF +YAKV SVRLP ++ADKR FCGTAL+EFS+E+DT+
Sbjct: 112 VHRRTLAASPFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQ 171

Query: 185 NILKQSLVFDGVQLELKPKKEFDADRAELEEEFKNRPLTGXXXXXXXXAEAAYPKGLIVA 244
           +IL+QSLV+ G  L L PK +FD  R  + ++                +   + +G IV 
Sbjct: 172 DILRQSLVYAGADLVLIPKSDFDCQRENMIKQL-----------GKSESHNEFRRGQIVK 220

Query: 245 FTLKGLSAGGSVGHDQEPVNVEADVN-KEDGLPSVENADQEN 285
           F LK +++   V + ++P  ++  +  KED    + + ++EN
Sbjct: 221 FALKWIASEEKVTNKEKPSALKNKIKEKEDKETGIADREKEN 262


>AT1G79880.2 | Symbols:  | La domain-containing protein |
           chr1:30046222-30048014 REVERSE
          Length = 345

 Score =  168 bits (425), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 12/219 (5%)

Query: 68  MKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDEAIEQLDG 127
           M+  L L ++  E+IP   ++ VA  LR S  LKVS +G+++GR   L KP+E +EQ+  
Sbjct: 1   MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60

Query: 128 RTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTEEDTENIL 187
           RT+AASP  Y +K EDV SFF +YAKV SVRLP ++ADKR FCGTAL+EFS+E+DT++IL
Sbjct: 61  RTLAASPFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDIL 120

Query: 188 KQSLVFDGVQLELKPKKEFDADRAELEEEFKNRPLTGXXXXXXXXAEAAYPKGLIVAFTL 247
           +QSLV+ G  L L PK +FD  R  + ++                +   + +G IV F L
Sbjct: 121 RQSLVYAGADLVLIPKSDFDCQRENMIKQL-----------GKSESHNEFRRGQIVKFAL 169

Query: 248 KGLSAGGSVGHDQEPVNVEADVN-KEDGLPSVENADQEN 285
           K +++   V + ++P  ++  +  KED    + + ++EN
Sbjct: 170 KWIASEEKVTNKEKPSALKNKIKEKEDKETGIADREKEN 208


>AT1G79880.3 | Symbols:  | La domain-containing protein |
           chr1:30046222-30048014 REVERSE
          Length = 357

 Score =  167 bits (424), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 12/219 (5%)

Query: 68  MKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDEAIEQLDG 127
           M+  L L ++  E+IP   ++ VA  LR S  LKVS +G+++GR   L KP+E +EQ+  
Sbjct: 1   MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60

Query: 128 RTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTEEDTENIL 187
           RT+AASP  Y +K EDV SFF +YAKV SVRLP ++ADKR FCGTAL+EFS+E+DT++IL
Sbjct: 61  RTLAASPFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDIL 120

Query: 188 KQSLVFDGVQLELKPKKEFDADRAELEEEFKNRPLTGXXXXXXXXAEAAYPKGLIVAFTL 247
           +QSLV+ G  L L PK +FD  R  + ++                +   + +G IV F L
Sbjct: 121 RQSLVYAGADLVLIPKSDFDCQRENMIKQL-----------GKSESHNEFRRGQIVKFAL 169

Query: 248 KGLSAGGSVGHDQEPVNVEADVN-KEDGLPSVENADQEN 285
           K +++   V + ++P  ++  +  KED    + + ++EN
Sbjct: 170 KWIASEEKVTNKEKPSALKNKIKEKEDKETGIADREKEN 208


>AT2G43970.1 | Symbols:  | La domain-containing protein |
           chr2:18205535-18208031 REVERSE
          Length = 545

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 6   LDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLALICSF 65
           L E + ++++ QVE+Y +      T+ +   I    +G             V + ++ SF
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEG------------YVPIHVVASF 236

Query: 66  KKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDEAIEQL 125
           KK+K  +  N              +A  L+ S  L VSEDGKKV RI+ +   + AIE+L
Sbjct: 237 KKIKAVINNNS------------QLAAVLQNSAKLFVSEDGKKVRRISPIT--ESAIEEL 282

Query: 126 DGRTVAASPLGYDVKREDVESFFGKYAKVTSVR 158
             R + A  L  D   +++   F     V ++R
Sbjct: 283 QSRIIVAENLPEDHCYQNLMKIFSTVGSVKNIR 315


>AT2G43970.2 | Symbols:  | La domain-containing protein |
           chr2:18205535-18208031 REVERSE
          Length = 529

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 6   LDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLALICSF 65
           L E + ++++ QVE+Y +      T+ +   I    +G             V + ++ SF
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEG------------YVPIHVVASF 236

Query: 66  KKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDEAIEQL 125
           KK+K  +  N              +A  L+ S  L VSEDGKKV RI+ +   + AIE+L
Sbjct: 237 KKIKAVINNN------------SQLAAVLQNSAKLFVSEDGKKVRRISPIT--ESAIEEL 282

Query: 126 DGRTVAASPLGYDVKREDVESFFGKYAKVTSVR 158
             R + A  L  D   +++   F     V ++R
Sbjct: 283 QSRIIVAENLPEDHCYQNLMKIFSTVGSVKNIR 315