Jatropha Genome Database

JcCB0057111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057111.10 + phase: 0 /TE/pseudo/partial
         (174 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13920.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    74   7e-14
AT3G42860.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    63   7e-11
AT1G54930.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    63   9e-11

>AT5G13920.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr5:4485931-4487433 REVERSE
          Length = 415

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 64/134 (47%), Gaps = 33/134 (24%)

Query: 41  CFGCGKCGHWIKECPNKITKKSHXXXXXXXXXXXXXXXCDVLLIRCPCGRGKCRIFTSHT 100
           CF C + GHWI +CP K                          I+CPCG G C I  ++T
Sbjct: 11  CFRCRQAGHWINDCPLKSYTDDPPPA-----------------IQCPCGGGFCEIKVANT 53

Query: 101 QANPERKFYTCPVDKSSGSCGFFKWCDEL---------SITPPICPCGAGFCSLNRDSTS 151
           + NP RKFY CP   ++ +C FFKWCD++         + T PIC CGAG C   +D + 
Sbjct: 54  RENPGRKFYKCP---TAQNCCFFKWCDKVTDEDIKFRPAFTIPICSCGAGPCRRVKDVSG 110

Query: 152 PYEEKWYFACRIKK 165
               + Y  C IKK
Sbjct: 111 ----RAYLICCIKK 120


>AT3G42860.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr3:14946458-14948097 REVERSE
          Length = 372

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 80  DVLLIRCPCGRGKCRIFTSHTQANPERKFYTCPVDKSSGSCGFFKWCDELSITPPI---- 135
           D     CPCG G C I TS+T  NP RKFY CP  + +G CGFF+WCD +  +       
Sbjct: 90  DFPEKSCPCGVGICLILTSNTPKNPGRKFYKCPNREENGGCGFFQWCDAVQSSGTSTTTS 149

Query: 136 ---------------CPCGAGFCSLNRDSTSPYEEKWYFACRI 163
                          CPCGAG C +    T     + ++ C +
Sbjct: 150 NSYGNGNDTKFPDHQCPCGAGLCRVLTAKTGENVGRQFYRCPV 192



 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 85  RCPCGRGKCRIFTSHTQANPERKFYTCPVDKSSGSCGFFKWCDELSITPPI 135
           +CPCG G CR+ T+ T  N  R+FY CPV +  GSCGFFKWC++  ++ P 
Sbjct: 164 QCPCGAGLCRVLTAKTGENVGRQFYRCPVFE--GSCGFFKWCNDNVVSSPT 212


>AT1G54930.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr1:20478267-20479671 REVERSE
          Length = 353

 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 42/88 (47%), Gaps = 17/88 (19%)

Query: 41  CFGCGKCGHWIKECPNKITKKSHXXXXXXXXXXXXXXXCDVLLIRCPCGRGKCRIFTSHT 100
           CF C + GHW K CP K T K                      I CPC  G C   TS T
Sbjct: 6   CFHCHQPGHWAKNCPLKTTTKPTAAAAPSPPD-----------IHCPCNAGPCNTVTSKT 54

Query: 101 QANPERKFYTCPVDKSSGSCGFFKWCDE 128
           + NP R+FYTCP      SCG+FKWCD+
Sbjct: 55  EKNPNRRFYTCP------SCGYFKWCDQ 76