Jatropha Genome Database

JcCB0055221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0055221.20 + phase: 0 /pseudo
         (290 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31860.1 | Symbols: AT-IE, HISN2 | AT-IE; phosphoribosyl-AMP ...   147   6e-36

>AT1G31860.1 | Symbols: AT-IE, HISN2 | AT-IE; phosphoribosyl-AMP
           cyclohydrolase/ phosphoribosyl-ATP diphosphatase |
           chr1:11434250-11436530 REVERSE
          Length = 281

 Score =  147 bits (372), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 84/99 (84%)

Query: 190 FSQRKAELVVPEDGKPSWTKRLLLDRNLLCSKIREEADELCRTIEENEHSARTASEMGDV 249
            S+RK E  VP++GKPSWT+RLL D  LLCSKIREEADELCRT+E+NE  +RT SEM DV
Sbjct: 183 ISKRKEESTVPQEGKPSWTRRLLTDDALLCSKIREEADELCRTLEDNEEVSRTPSEMADV 242

Query: 250 LYHTMVLLALKDVKIEDVLDVLRRRFSQSGIEEKKSRGQ 288
           LYH MVLL+ + VK+EDVL+VLR+RFSQSGIEEK++R +
Sbjct: 243 LYHAMVLLSKRGVKMEDVLEVLRKRFSQSGIEEKQNRTK 281



 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 8/126 (6%)

Query: 1   MAASSLHCIQSLRFSSRSCAFFPH-IGFRGDDDNKRKNSRLILASVKKSDKDLSVESKVE 59
           MA S     QSL   +RS  F P    FR  D   R  S ++ A     +K++++++KV+
Sbjct: 1   MAVSYNALAQSL---ARSSCFIPKPYSFR--DTKLRSRSNVVFAC--NDNKNIALQAKVD 53

Query: 60  TLLDSVKWDDKGLAVAIAQNIDTGAILMQGFVNRDALATTISSRKATXLQSVTVNIVDKG 119
            LLD +KWDDKGLAVAIAQN+DTGA+LMQGFVNR+AL+TTISSRKAT        +  KG
Sbjct: 54  NLLDRIKWDDKGLAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKG 113

Query: 120 RNLQQF 125
                F
Sbjct: 114 ETSNNF 119