Jatropha Genome Database

JcCB0052901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052901.10 + phase: 0 /pseudo/partial
         (295 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11820.2 | Symbols: MVA1 | MVA1; acetyl-CoA C-acetyltransfera...   441   e-124
AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778 | MVA1; acetyl-CoA C-...   330   9e-91

>AT4G11820.2 | Symbols: MVA1 | MVA1; acetyl-CoA C-acetyltransferase/
           hydroxymethylglutaryl-CoA synthase |
           chr4:7109124-7111901 REVERSE
          Length = 461

 Score =  441 bits (1133), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 206/253 (81%), Positives = 221/253 (87%)

Query: 1   MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTVGLGQDCMAFCSEVEDVISMSLTA 60
           MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYT+GLGQDC+AFC+E+EDVISMS  A
Sbjct: 1   MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNA 60

Query: 61  VSSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTNACYGG 120
           V+SL EKY IDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTDVEGVDSTNACYGG
Sbjct: 61  VTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGG 120

Query: 121 TAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXXXFESK 180
           TAALLNCVNWVESNSWDGRYGLV+CTDSAVYAEGPAR                   FESK
Sbjct: 121 TAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESK 180

Query: 181 FRGSHMSHTYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKNFCAKYEKFKGKQFSISD 240
            R SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C K+EK +GK+FSI+D
Sbjct: 181 LRASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSIND 240

Query: 241 AEYFVFHSPYNKV 253
           A+Y VFHSPYNK+
Sbjct: 241 ADYIVFHSPYNKL 253


>AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778 | MVA1; acetyl-CoA
           C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase
           | chr4:7109124-7111213 REVERSE
          Length = 406

 Score =  330 bits (845), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 155/198 (78%), Positives = 166/198 (83%)

Query: 56  MSLTAVSSLLEKYNIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDVEGVDSTN 115
           MS  AV+SL EKY IDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTDVEGVDSTN
Sbjct: 1   MSFNAVTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTN 60

Query: 116 ACYGGTAALLNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARXXXXXXXXXXXXXXXXXX 175
           ACYGGTAALLNCVNWVESNSWDGRYGLV+CTDSAVYAEGPAR                  
Sbjct: 61  ACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPI 120

Query: 176 XFESKFRGSHMSHTYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKNFCAKYEKFKGKQ 235
            FESK R SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C K+EK +GK+
Sbjct: 121 VFESKLRASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKE 180

Query: 236 FSISDAEYFVFHSPYNKV 253
           FSI+DA+Y VFHSPYNK+
Sbjct: 181 FSINDADYIVFHSPYNKL 198