Jatropha Genome Database

JcCB0052881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052881.10 + phase: 0 /pseudo/partial
         (283 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2B (BR...   317   5e-87
AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein...   308   3e-84
AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein...   302   2e-82

>AT5G01630.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2B
            (BRCA2-LIKE B); protein binding / single-stranded DNA
            binding | chr5:235117-240911 REVERSE
          Length = 1155

 Score =  317 bits (812), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 152/264 (57%), Positives = 198/264 (75%), Gaps = 7/264 (2%)

Query: 15   ATKQLDMDKAIKKALQDAGIQEREVTPFLRVRVVGLTSY--HGKAVAKEGLITIWSPTEK 72
            A KQ+ M+K++ KAL+DAG+ ER VTPF+R+R+VGLTS    G+   KEG++TIW PTE+
Sbjct: 879  AAKQMQMEKSVAKALEDAGLGERNVTPFMRIRLVGLTSLSNEGEHNPKEGIVTIWDPTER 938

Query: 73   QRNELVEGQAYAIAGLLPVNADSNTLYLQARGSTTKWEPLSPLAIKNFQPFFNPRVSVLM 132
            QR EL EG+ Y + GL+P+N+DS TLYL ARGS+++W+PLSP   +NFQPFFNPR  + +
Sbjct: 939  QRTELTEGKIYIMKGLVPMNSDSETLYLHARGSSSRWQPLSPKDSENFQPFFNPRKPISL 998

Query: 133  SNLGEVPLSSEFDIAAYVVYVGEVYTTAQWKKQWVFVTDCSISALWSEELSNSLLAISFC 192
            SNLGE+PLSSEFDIAAYVVYVG+ YT    KKQWVFVTD S     S E+SNSLLAISF 
Sbjct: 999  SNLGEIPLSSEFDIAAYVVYVGDAYTDVLQKKQWVFVTDGSTQ--HSGEISNSLLAISFS 1056

Query: 193  SPYIDDDSFTPINYNLEGSAVGFFNLIKKAKDQINHLWIAEATENSTYSFSFDSPICSHL 252
            +P++DD S + I++NL GS VGF NLIK+AKD  N +W+AE TENS Y  + ++   SHL
Sbjct: 1057 TPFMDDSSVSHISHNLVGSVVGFCNLIKRAKDATNEMWVAETTENSVYFINAEAAYSSHL 1116

Query: 253  KIAAASAQSWGK---TSSLVHNLQ 273
            K  +A  Q+W K   + S++H L+
Sbjct: 1117 KTRSAHIQTWAKLYSSKSVIHELR 1140


>AT4G00020.1 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein
            binding / single-stranded DNA binding | chr4:4107-10364
            REVERSE
          Length = 1151

 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 149/264 (56%), Positives = 196/264 (74%), Gaps = 7/264 (2%)

Query: 15   ATKQLDMDKAIKKALQDAGIQEREVTPFLRVRVVGLTS--YHGKAVAKEGLITIWSPTEK 72
            A +Q+  +K++ + L+DAG+ ER VTPF+R+R+VGLTS  Y G+   KEG++TIW PTE+
Sbjct: 875  AAQQMRKEKSVAETLEDAGLGERNVTPFMRIRLVGLTSLSYEGEHNPKEGIVTIWDPTER 934

Query: 73   QRNELVEGQAYAIAGLLPVNADSNTLYLQARGSTTKWEPLSPLAIKNFQPFFNPRVSVLM 132
            QR EL EG+ Y + GL+P+N+DS  LYL ARGS+++W+PLSP   +NFQPFFNPR  + +
Sbjct: 935  QRTELTEGKIYMMKGLVPINSDSEILYLHARGSSSRWQPLSPKDSENFQPFFNPRKPISL 994

Query: 133  SNLGEVPLSSEFDIAAYVVYVGEVYTTAQWKKQWVFVTDCSISALWSEELSNSLLAISFC 192
            SNLGE+PLSSEFDIAAYVVYVG  YT    KKQWVFVTD   SA  S E+SNSLLAISF 
Sbjct: 995  SNLGEIPLSSEFDIAAYVVYVGNAYTDVLQKKQWVFVTDG--SAQHSGEISNSLLAISFS 1052

Query: 193  SPYIDDDSFTPINYNLEGSAVGFFNLIKKAKDQINHLWIAEATENSTYSFSFDSPICSHL 252
            + ++DD S + I++NL GS VGF NLIK+AKD  N +W+AEA ENS Y  + ++   SHL
Sbjct: 1053 TSFMDDSSVSHISHNLVGSVVGFCNLIKRAKDVTNEIWVAEAAENSVYFINAEAAYSSHL 1112

Query: 253  KIAAASAQSWGKTS---SLVHNLQ 273
            K ++A  Q+W K S   S++H L+
Sbjct: 1113 KTSSAHIQTWAKLSSSKSVIHELR 1136


>AT4G00020.2 | Symbols: MEE43, EDA20, BRCA2(IV), BRCA2A | protein
            binding / single-stranded DNA binding | chr4:2895-10364
            REVERSE
          Length = 1187

 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/250 (57%), Positives = 188/250 (75%), Gaps = 4/250 (1%)

Query: 15   ATKQLDMDKAIKKALQDAGIQEREVTPFLRVRVVGLTS--YHGKAVAKEGLITIWSPTEK 72
            A +Q+  +K++ + L+DAG+ ER VTPF+R+R+VGLTS  Y G+   KEG++TIW PTE+
Sbjct: 870  AAQQMRKEKSVAETLEDAGLGERNVTPFMRIRLVGLTSLSYEGEHNPKEGIVTIWDPTER 929

Query: 73   QRNELVEGQAYAIAGLLPVNADSNTLYLQARGSTTKWEPLSPLAIKNFQPFFNPRVSVLM 132
            QR EL EG+ Y + GL+P+N+DS  LYL ARGS+++W+PLSP   +NFQPFFNPR  + +
Sbjct: 930  QRTELTEGKIYMMKGLVPINSDSEILYLHARGSSSRWQPLSPKDSENFQPFFNPRKPISL 989

Query: 133  SNLGEVPLSSEFDIAAYVVYVGEVYTTAQWKKQWVFVTDCSISALWSEELSNSLLAISFC 192
            SNLGE+PLSSEFDIAAYVVYVG  YT    KKQWVFVTD   SA  S E+SNSLLAISF 
Sbjct: 990  SNLGEIPLSSEFDIAAYVVYVGNAYTDVLQKKQWVFVTDG--SAQHSGEISNSLLAISFS 1047

Query: 193  SPYIDDDSFTPINYNLEGSAVGFFNLIKKAKDQINHLWIAEATENSTYSFSFDSPICSHL 252
            + ++DD S + I++NL GS VGF NLIK+AKD  N +W+AEA ENS Y  + ++   SHL
Sbjct: 1048 TSFMDDSSVSHISHNLVGSVVGFCNLIKRAKDVTNEIWVAEAAENSVYFINAEAAYSSHL 1107

Query: 253  KIAAASAQSW 262
            K ++A  Q+W
Sbjct: 1108 KTSSAHIQTW 1117