Jatropha Genome Database

JcCB0052451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0052451.10 + phase: 1 /partial/short
         (46 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localize...    97   3e-21

>AT1G10500.1 | Symbols: ATCPISCA | ATCPISCA (chloroplast-localized
           IscA-like protein); structural molecule |
           chr1:3460160-3461340 REVERSE
          Length = 180

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/46 (95%), Positives = 45/46 (97%)

Query: 1   CDPKSLLFLFGMQLDYSDALIGGGFSFKNPNATQTCGCGKSFAAEM 46
           CDPKS+LFLFGMQLDYSDALIGGGFSF NPNATQTCGCGKSFAAEM
Sbjct: 135 CDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSFAAEM 180