Jatropha Genome Database

JcCB0050421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0050421.20 + phase: 1 /TE
         (1716 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...    90   2e-17
ATMG00750.1 | Symbols: ORF119 | hypothetical protein | chrM:2208...    86   2e-16

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
            chrM:235916-236392 FORWARD
          Length = 158

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 1009 LHNLSLVMQRCEDTNLVLNWEKCHFMVSEGIVLGHK--ISQKGIEVDKAKIEVIEKLPPP 1066
            +++L +V+Q  E      N +KC F   +   LGH+  IS +G+  D AK+E +   P P
Sbjct: 1    MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 1067 NTVKGIRSFLGHAGFYRRFIKDFSKITKPLCNLLVKDAPFDFDKECLDAFNRLKKELISA 1126
                 +R FLG  G+YRRF+K++ KI +PL  LL K++   + +    AF  LK  + + 
Sbjct: 61   KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTL 119

Query: 1127 PIITTPDWTLPF 1138
            P++  PD  LPF
Sbjct: 120  PVLALPDLKLPF 131


>ATMG00750.1 | Symbols: ORF119 | hypothetical protein |
            chrM:220830-221189 FORWARD
          Length = 119

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 1370 ILESGLYWPNLFKDAYNFVRLCDRCQRLGNISKRHEMPLNSILEVEIFDIWGLDFM 1425
            +L++G YWP  FKDA+ FV  CD CQR GN +KR+EMP + ILEVE+FD+WG+ FM
Sbjct: 35   VLQAGFYWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90